get_aau: Amino Acid Usage
In cubar: Codon Usage Bias Analysis

get_aau

R Documentation

Amino Acid Usage

Calculate Amino Acid Usage Frequencies of each CDS.

get_aau(cf, codon_table = get_codon_table())

`cf`	matrix of codon frequencies as calculated by 'count_codons()'.
`codon_table`	a table of genetic code derived from `get_codon_table` or `create_codon_table`.

a matrix of amino acid frequencies for each CDS. Each row corresponds to a sequence, and each column represents an amino acid.

# estimate amino acid frequencies of yeast CDSs
cf_all <- count_codons(yeast_cds)
aau_gene <- get_aau(cf_all)
head(aau_gene)

cubar documentation built on Aug. 21, 2025, 5:40 p.m.

cubar index

Note that we can't provide technical support on individual packages. You should contact the package authors for that.