get_gc: GC contents
In cubar: Codon Usage Bias Analysis
get_gc R Documentation
GC contents
Description
Calculate GC content of the whole sequences.
Usage
get_gc(cf)
Arguments
cf
matrix of codon frequencies as calculated by 'count_codons()'.
Value
a named vector of GC contents.
Examples
# estimate GC content of yeast genes
cf_all <- count_codons(yeast_cds)
gc <- get_gc(cf_all)
head(gc)
hist(gc)
cubar documentation built on April 3, 2025, 8:58 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| get_gc | R Documentation |
GC contents
Description
Calculate GC content of the whole sequences.
Usage
get_gc(cf)
Arguments
cf |
matrix of codon frequencies as calculated by 'count_codons()'. |
Value
a named vector of GC contents.
Examples
# estimate GC content of yeast genes
cf_all <- count_codons(yeast_cds)
gc <- get_gc(cf_all)
head(gc)
hist(gc)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.