plot_ca_pairs: Plot codon-anticodon pairing relationship

In cubar: Codon Usage Bias Analysis

Plot codon-anticodon pairing relationship

Description

plot_ca_pairs show possible codon-anticodons pairings

Usage

plot_ca_pairs(codon_table = get_codon_table(), pairs = pairs)

Arguments

codon_table	a table of genetic code derived from get_codon_table or create_codon_table.
pairs	a table of codon-anticodon pairing derived from ca_pairs

Value

a plot on possible codon-anticodons pairings

Examples

# plot possible codon and anticodon pairings for the vertebrate mitochondrial genetic code
ctab <- get_codon_table(gcid = '2')
pairs <- ca_pairs(ctab, plot = TRUE)
plot_ca_pairs(ctab, pairs)

# plot possible codon and anticodon pairings for the standard genetic code in bacteria
plot_ca_pairs(pairs = ca_pairs(domain = "Bacteria", plot = TRUE))

cubar documentation built on Aug. 21, 2025, 5:40 p.m.