dknn.classify: Depth-Based kNN

In ddalpha: Depth-Based Classification and Calculation of Data Depth

Depth-Based kNN

Description

The implementation of the affine-invariant depth-based kNN of Paindaveine and Van Bever (2015).

Usage

dknn.classify(objects, data, k, depth = "halfspace", seed = 0)

Arguments

objects	Matrix containing objects to be classified; each row is one d-dimensional object.
data	Matrix containing training sample where each of n rows is one object of the training sample where first d entries are inputs and the last entry is output (class label).
k	the number of neighbours
depth	Character string determining which depth notion to use; the default value is "halfspace". Currently the method supports the following depths: "halfspace", "Mahalanobis", "simplicial".
seed	the random seed. The default value seed=0 makes no changes.

Value

List containing class labels, or character string "Ignored" for the outsiders if "Ignore" was specified as the outsider treating method.

References

Paindaveine, D. and Van Bever, G. (2015). Nonparametrically consistent depth-based classifiers. Bernoulli 21 62–82.

See Also

dknn.train to train the Dknn-classifier.

dknn.classify.trained to classify with the Dknn-classifier.

ddalpha.train to train the DDα-classifier.

ddalpha.getErrorRateCV and ddalpha.getErrorRatePart to get error rate of the Dknn-classifier on particular data (set separator = "Dknn").

Examples

# Generate a bivariate normal location-shift classification task
# containing 200 training objects and 200 to test with
class1 <- mvrnorm(200, c(0,0), 
                  matrix(c(1,1,1,4), nrow = 2, ncol = 2, byrow = TRUE))
class2 <- mvrnorm(200, c(2,2), 
                  matrix(c(1,1,1,4), nrow = 2, ncol = 2, byrow = TRUE))
trainIndices <- c(1:100)
testIndices <- c(101:200)
propertyVars <- c(1:2)
classVar <- 3
trainData <- rbind(cbind(class1[trainIndices,], rep(1, 100)), 
                   cbind(class2[trainIndices,], rep(2, 100)))
testData <- rbind(cbind(class1[testIndices,], rep(1, 100)), 
                  cbind(class2[testIndices,], rep(2, 100)))
data <- list(train = trainData, test = testData)

# Train the classifier
# and get the classification error rate
cls <- dknn.train(data$train, kMax = 20, depth = "Mahalanobis")
cls$k
classes1 <- dknn.classify.trained(data$test[,propertyVars], cls)
cat("Classification error rate: ", 
    sum(unlist(classes1) != data$test[,classVar])/200)

# Classify the new data based on the old ones in one step
classes2 <- dknn.classify(data$test[,propertyVars], data$train, k = cls$k, depth = "Mahalanobis")
cat("Classification error rate: ", 
    sum(unlist(classes2) != data$test[,classVar])/200)

ddalpha documentation built on March 23, 2022, 9:07 a.m.