plot.custom_thresholds: Plot a ddPCR plate of type custom thresholds

In ddpcr: Analysis and Visualization of Droplet Digital PCR in R and on the Web

Plot a ddPCR plate of type custom thresholds

Description

Same plot as plot.ddpcr_plate but with a few extra features that are specific to plates with custom thresholds. Take a look at plot.ddpcr_plate to see all supported parameters and more information.

Usage

## S3 method for class 'custom_thresholds'
plot(
  x,
  wells,
  samples,
  ...,
  show_thresholds = TRUE,
  col_thresholds = "black",
  show_drops_empty = TRUE,
  col_drops_x_positive = "green3",
  col_drops_y_positive = "blue",
  col_drops_both_positive = "orange"
)

Arguments

x	A ddPCR plate.
wells	Only plot selected wells. Supports range notation, see subset.ddpcr_plate.
samples	Only plot selected samples.
...	Parameters to pass to plot.ddpcr_plate.
show_thresholds	If TRUE, show the thresholds.
col_thresholds	The colour of the threshold lines.
show_drops_empty	Whether or not to show the droplets defined as empty.
col_drops_x_positive	The colour to use for droplets that are in the X+Y- quadrant.
col_drops_y_positive	The colour to use for droplets that are in the X-Y+ quadrant.
col_drops_both_positive	The colour to use for droplets that are in the X+Y+ quadrant.

Value

A ggplot2 plot object.

See Also

plot.ddpcr_plate
custom_thresholds

Examples

## Not run: 
plate <- new_plate(sample_data_dir(), type = plate_types$custom_thresholds)
plate %>% set_thresholds(c(5500, 8000)) %>% analyze %>% plot

## End(Not run)

ddpcr documentation built on Aug. 21, 2023, 1:07 a.m.