API for ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web
| Global functions | |
|---|---|
| WELL_ID_REGEX | Man page |
| \%>\% | Man page |
| \%btwn\% | Man page |
| analysis_complete | Man page Source code |
| analyze | Man page Source code |
| arrange_meta | Source code |
| bind_df_ends | Man page Source code |
| calc_negative_freq_simple | Man page Source code |
| calculate_concentration | Man page Source code |
| calculate_concentration_single | Man page Source code |
| calculate_neg_freq_single | Man page Source code |
| calculate_negative_freqs | Man page Source code |
| capitalize | Man page Source code |
| cat0 | Man page Source code |
| check_step | Man page Source code |
| classify_droplets | Man page Source code |
| classify_droplets.pnpp_experiment | Man page Source code |
| classify_droplets_single | Man page Source code |
| classify_droplets_single.pnpp_experiment | Man page Source code |
| classify_thresholds | Man page Source code |
| cluster | Man page Source code |
| cluster_name | Man page Source code |
| clusters | Man page Source code |
| col_to_num | Man page Source code |
| custom_thresholds | Man page |
| ddpcr | Man page |
| ddpcr-package | Man page |
| ddpcr_plate | Man page |
| define_clusters | Man page Source code |
| define_clusters.custom_thresholds | Man page Source code |
| define_clusters.ddpcr_plate | Man page Source code |
| define_clusters.pnpp_experiment | Man page Source code |
| define_params | Man page Source code |
| define_params.custom_thresholds | Man page Source code |
| define_params.ddpcr_plate | Man page Source code |
| define_params.fam_positive_pnpp | Man page Source code |
| define_params.hex_positive_pnpp | Man page Source code |
| define_params.pnpp_experiment | Man page Source code |
| define_params.wildtype_mutant_pnpp | Man page Source code |
| define_steps | Man page Source code |
| define_steps.custom_thresholds | Man page Source code |
| define_steps.ddpcr_plate | Man page Source code |
| define_steps.pnpp_experiment | Man page Source code |
| diff.point2d | Man page Source code |
| empty_plate | Source code |
| err_msg | Man page Source code |
| fam_positive_pnpp | Man page |
| find_data_files | Source code |
| find_meta_file | Source code |
| format.point2d | Source code |
| get_col | Man page Source code |
| get_consensus_name_from_data_files | Source code |
| get_empty_cutoff | Man page Source code |
| get_empty_cutoff.ddpcr_plate | Man page Source code |
| get_empty_cutoff.pnpp_experiment | Man page Source code |
| get_filled_border | Man page Source code |
| get_filled_drops | Man page Source code |
| get_name_from_data_file | Source code |
| get_outlier_cutoff | Man page Source code |
| get_outlier_cutoff.ddpcr_plate | Man page Source code |
| get_row | Man page Source code |
| get_single_well | Man page Source code |
| get_well_from_data_file | Source code |
| get_wells_btwn | Man page Source code |
| has_signif_negative_cluster | Man page Source code |
| has_step | Man page Source code |
| hex_positive_pnpp | Man page |
| init_data | Source code |
| init_meta | Source code |
| init_plate | Source code |
| is_dir | Man page Source code |
| is_dirty | Man page Source code |
| is_empty_plate | Man page Source code |
| is_file | Man page Source code |
| is_range | Man page Source code |
| is_well_success | Man page Source code |
| is_well_success.ddpcr_plate | Man page Source code |
| is_well_success.pnpp_experiment | Man page Source code |
| launch | Man page Source code |
| load_plate | Man page Source code |
| local_maxima | Man page Source code |
| local_minima | Man page Source code |
| lol_to_df | Man page Source code |
| mark_clusters | Man page Source code |
| merge_dfs_overwrite_col | Man page Source code |
| meta_var_name | Man page Source code |
| move_back | Man page Source code |
| move_front | Man page Source code |
| msg | Man page Source code |
| name | Man page Source code |
| name<- | Man page |
| named_vec_to_df | Man page Source code |
| negative_name | Man page Source code |
| negative_name<- | Man page |
| nevercalled | Source code |
| new_plate | Man page Source code |
| next_step | Man page Source code |
| normalize_to_rds | Man page Source code |
| num_to_col | Man page Source code |
| num_to_row | Man page Source code |
| other_dim | Man page Source code |
| params | Man page Source code |
| params<- | Man page |
| parent_plate_type | Man page Source code |
| parent_plate_type.ddpcr_plate | Man page Source code |
| parent_plate_type.default | Man page Source code |
| parent_plate_type.fam_positive_pnpp | Man page Source code |
| parent_plate_type.hex_positive_pnpp | Man page Source code |
| parent_plate_type.wildtype_mutant_pnpp | Man page Source code |
| pkg_globals_store | Source code |
| plate_data | Man page Source code |
| plate_data<- | Man page |
| plate_meta | Man page Source code |
| plate_meta<- | Man page |
| plate_types | Man page |
| plot.custom_thresholds | Man page Source code |
| plot.ddpcr_plate | Man page Source code |
| plot.pnpp_experiment | Man page Source code |
| plot.wildtype_mutant_pnpp | Man page Source code |
| pnpp_experiment | Man page |
| point2d | Man page Source code |
| positive_dim | Man page Source code |
| positive_dim<- | Man page |
| positive_dim_var | Man page Source code |
| positive_name | Man page Source code |
| positive_name<- | Man page |
| print.ddpcr_plate | Man page Source code |
| print.point2d | Source code |
| quiet | Man page Source code |
| range_list_to_vec | Man page Source code |
| range_to_endpoints | Man page Source code |
| range_to_seq | Man page Source code |
| read_dir | Source code |
| read_files | Source code |
| read_plate | Source code |
| reclassify_droplets | Man page Source code |
| reclassify_droplets.pnpp_experiment | Man page Source code |
| reclassify_droplets_single | Man page Source code |
| reclassify_droplets_single.pnpp_experiment | Man page Source code |
| remove_empty | Man page Source code |
| remove_empty.ddpcr_plate | Man page Source code |
| remove_empty.pnpp_experiment | Man page Source code |
| remove_failures | Man page Source code |
| remove_failures.ddpcr_plate | Man page Source code |
| remove_outliers | Man page Source code |
| remove_outliers.ddpcr_plate | Man page Source code |
| reset | Man page Source code |
| row_to_num | Man page Source code |
| sample_data | Man page |
| sample_data_dir | Man page Source code |
| sample_data_file | Man page Source code |
| sample_plate | Man page Source code |
| sample_results_file | Man page Source code |
| save_plate | Man page Source code |
| set_default_clusters | Source code |
| set_default_params | Man page Source code |
| set_default_steps | Source code |
| set_plate_type | Source code |
| set_thresholds | Man page Source code |
| setup_new_plate | Source code |
| setup_plate | Source code |
| status | Man page Source code |
| status<- | Man page |
| step | Man page Source code |
| step_begin | Man page Source code |
| step_end | Man page Source code |
| step_name | Man page Source code |
| steps | Man page Source code |
| subset.ddpcr_plate | Man page Source code |
| thresholds | Man page Source code |
| thresholds<- | Man page |
| type | Man page Source code |
| unanalyzed_clusters | Man page Source code |
| variable_dim | Man page Source code |
| variable_dim<- | Man page |
| variable_dim_var | Man page Source code |
| warn_msg | Man page Source code |
| well_info | Man page Source code |
| wells_failed | Man page Source code |
| wells_mutant | Man page Source code |
| wells_negative | Man page Source code |
| wells_positive | Man page Source code |
| wells_success | Man page Source code |
| wells_used | Man page Source code |
| wells_wildtype | Man page Source code |
| wildtype_mutant_pnpp | Man page |
| x_threshold | Man page Source code |
| x_threshold<- | Man page |
| x_var | Man page Source code |
| x_var<- | Man page |
| y_threshold | Man page Source code |
| y_threshold<- | Man page |
| y_var | Man page Source code |
| y_var<- | Man page |
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