remove_outliers: Analysis Step: Remove outlier droplets

Description Usage Arguments Details Value Note See Also

View source: R/outliers.R

Description

Identify droplets that have an abnormally high fluorescence intensity as outliers. Any such droplets will be assigned to the OUTLIER cluster.

See the README for more information about the algorithm used to find outlier droplets.

Usage

1

Arguments

plate

A ddPCR plate.

Details

This function is recommended to be run as part of an analysis pipeline (ie. within the analyze function) rather than being called directly.

Value

A ddPCR plate with outlier droplets marked as outliers. The plate's metadata will have a new variable drops_outlier which will count the number of outlier droplets in each well.

Note

This is an S3 generic, which means that different ddPCR plate types can implement this function differently. See the README for more information on how to implement custom ddPCR plate types.

See Also

analyze
get_outlier_cutoff


ddpcr documentation built on July 8, 2020, 6:49 p.m.