remove_failures: Analysis step: Remove failed wells

Description Usage Arguments Details Value Note See Also

View source: R/failures.R

Description

Check if any wells have failed the ddPCR experiment by checking a series of quality control metrics. If any well is deemed as a failure, all the droplets in that well will be assigned to the FAILED cluster.

See the README for more information about the algorithm used to find failed wells.

Usage

1

Arguments

plate

A ddPCR plate.

Details

This function is recommended to be run as part of an analysis pipeline (ie. within the analyze function) rather than being called directly.

Value

A ddPCR plate with the droplets in failed wells marked as failed. The plate's metadata will have a new variable success which will be FALSE for any failed well and TRUE for all others.

Note

This is an S3 generic, which means that different ddPCR plate types can implement this function differently. See the README for more information on how to implement custom ddPCR plate types.

See Also

analyze
is_well_success


ddpcr documentation built on July 8, 2020, 6:49 p.m.