compare_contig_subsets: Compares contig subset x against contig subset y

In demic: Dynamic Estimator of Microbial Communities

Compares contig subset x against contig subset y

Description

Compares contig subset x against contig subset y

Usage

compare_contig_subsets(
  est_ptrs_x,
  est_ptrs_y,
  pipeline_x,
  pipeline_y,
  cor_cutoff,
  max_cor
)

Arguments

est_ptrs_x	PTR estimates from contig subset x
est_ptrs_y	PTR estimates from contig subset y
pipeline_x	pipeline for contig subset x
pipeline_y	pipeline for contig subset y
cor_cutoff	the correlation cutoff
max_cor	the max correlation

Value

a named list including the est_ptr dataframe and a max_cor value

• sample: sample

• est_ptr: PTR estimate

• coefficient: coefficient of linear regression

• pValue: p-value of linear regression

• cor: correlation coefficient

• correctY: corrected coverage

max_cor: the max correlation achieved

demic documentation built on May 29, 2024, 10:05 a.m.