get_eptr_stats: Generate a variety of stats on PTR estimates for a given...
In demic: Dynamic Estimator of Microbial Communities
View source: R/est_ptr_stats.R
get_eptr_stats R Documentation
Generate a variety of stats on PTR estimates for a given dataset
Description
Generate a variety of stats on PTR estimates for a given dataset
Usage
get_eptr_stats(X, iterations = 30)
Arguments
X
cov3 dataframe
iterations
number of iterations to run
Value
named list of stats on PTR estimates
all_sd: standard deviation of PTR estimates from all method
all_mean: mean of PTR estimates from all method
contigs_sd: standard deviation of PTR estimates from contigs method
contigs_mean: mean of PTR estimates from contigs method
samples_sd: standard deviation of PTR estimates from samples method
samples_mean: mean of PTR estimates from samples method
Examples
stats <- get_eptr_stats(max_bin_001[max_bin_001$sample %in% c('Akk0_001', 'Akk1_001'), ], 2)
stats
demic documentation built on May 29, 2024, 10:05 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
View source: R/est_ptr_stats.R
| get_eptr_stats | R Documentation |
Generate a variety of stats on PTR estimates for a given dataset
Description
Generate a variety of stats on PTR estimates for a given dataset
Usage
get_eptr_stats(X, iterations = 30)
Arguments
X |
cov3 dataframe |
iterations |
number of iterations to run |
Value
named list of stats on PTR estimates
all_sd: standard deviation of PTR estimates from all method
all_mean: mean of PTR estimates from all method
contigs_sd: standard deviation of PTR estimates from contigs method
contigs_mean: mean of PTR estimates from contigs method
samples_sd: standard deviation of PTR estimates from samples method
samples_mean: mean of PTR estimates from samples method
Examples
stats <- get_eptr_stats(max_bin_001[max_bin_001$sample %in% c('Akk0_001', 'Akk1_001'), ], 2)
stats
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.