filter_sample: A function for sample filtration Input requirements: 1. have...
In demic: Dynamic Estimator of Microbial Communities
filter_sample R Documentation
A function for sample filtration
Input requirements: 1. have values in more than half of the contigs 2. average log2(cov) > 0 in all these contigs
Description
A function for sample filtration
Input requirements: 1. have values in more than half of the contigs 2. average log2(cov) > 0 in all these contigs
Usage
filter_sample(Z, avg_cutoff, cutoff_ratio)
Arguments
Z
a matrix
avg_cutoff
threshold of average
cutoff_ratio
threshold of ratio
Value
the coefficient and p value of linear regression
demic documentation built on May 29, 2024, 10:05 a.m.
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| filter_sample | R Documentation |
A function for sample filtration Input requirements: 1. have values in more than half of the contigs 2. average log2(cov) > 0 in all these contigs
Description
A function for sample filtration Input requirements: 1. have values in more than half of the contigs 2. average log2(cov) > 0 in all these contigs
Usage
filter_sample(Z, avg_cutoff, cutoff_ratio)
Arguments
Z |
a matrix |
avg_cutoff |
threshold of average |
cutoff_ratio |
threshold of ratio |
Value
the coefficient and p value of linear regression
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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