iterate_pipelines: A function for iteration of pipeline until convergence

View source: R/pipeline_core.R

iterate_pipelinesR Documentation

A function for iteration of pipeline until convergence

Description

A function for iteration of pipeline until convergence

Usage

iterate_pipelines(Z)

Arguments

Z

a matrix of coverages

Value

a named list

  • samples: vector of final filtered samples

  • correct_ys: matrix of sample, contig and corrected coverages

  • pc1: matrix of contig and PC1 values

  • pc1_range: vector of PC1 range

  • samples_y: samples filtered for reliable coverage


demic documentation built on May 29, 2024, 10:05 a.m.