diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package

Allows the calculation of both genetic diversity partition statistics, genetic differentiation statistics, and locus informativeness for ancestry assignment. It also provides users with various option to calculate bootstrapped 95\% confidence intervals both across loci, for pairwise population comparisons, and to plot these results interactively. Parallel computing capabilities and pairwise results without bootstrapping are provided. Also calculates F-statistics from Weir and Cockerham (1984). Various plotting features are provided, as well as Chi-square tests of genetic heterogeneity. Functionality for the calculation of various diversity parameters is possible for RAD-seq derived SNP data sets containing thousands of marker loci. A shiny application for the development of microsatellite multiplexes is also available.

Getting started

Package details

AuthorKevin Keenan <kkeenan02@qub.ac.uk>
MaintainerKevin Keenan <kkeenan02@qub.ac.uk>
LicenseGPL (>= 2)
URL http://diversityinlife.weebly.com/
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the diveRsity package in your browser

Any scripts or data that you put into this service are public.

diveRsity documentation built on May 1, 2019, 10:30 p.m.