genos2mat: Convert genos loci into presance absence matrices
In diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package
Description
Usage
Arguments
Author(s)
Description
A matrix for each locus is constructed with n rows and c columns, where n is the number of genotype individuals, and c is the total number of observed alleles at a locus. Individual are surveyed for alleles and assigned 0 for an absence, 0.5 for a single presence (i.e. heterozygote), and 1 for double presence (i.e. homozygote).
Usage
1
genos2mat(mat, ip, na)
Arguments
mat
A template matrix
ip
A character vector of alleles (e.g. genos[,i,j]) for all genotyped individual.
na
An NA replacement template
Author(s)
Kevin Keenan
diveRsity documentation built on May 1, 2019, 10:30 p.m.
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Description Usage Arguments Author(s)
Description
A matrix for each locus is constructed with n rows and c columns, where n is the number of genotype individuals, and c is the total number of observed alleles at a locus. Individual are surveyed for alleles and assigned 0 for an absence, 0.5 for a single presence (i.e. heterozygote), and 1 for double presence (i.e. homozygote).
Usage
1 | genos2mat(mat, ip, na)
|
Arguments
mat |
A template matrix |
ip |
A character vector of alleles (e.g. |
na |
An NA replacement template |
Author(s)
Kevin Keenan
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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