divSimCo: Similarity coefficients for co-dominant diploid genenotype...
In diveRsity: A Comprehensive, General Purpose Population Genetics Analysis Package

Description Usage Arguments Details Value Author(s) References

Calculation of similarity coefficients for co-dominant genotype data, following Kosman and Leonard, (2005).

1	divSimCo(infile = NULL, loci = FALSE, boots = 0)

`infile`	Specifying the name of the ‘genepop’ (Rousset, 2008) file from which the statistics are to be calculated This file can be in either the 3 digit of 2 digit format. See http://genepop.curtin.edu.au/help_input.html for detail on the genepop file format.
`loci`	A logical argument, specifying whether similarity matrices for each locus should be calculated. If `FALSE`, only a global similarity matrix is given.
`boots`	An integer, specifying the number of bootstrapped matrices to generate. Loci are resampled with replacement.

Similarity coefficients are calculated according to Kosman and Leonard, (2005). Multi-locus values are calculated from all loci without missing data.

A list containing either one (global) if loci = FALSE, or two elements (global and loci) if loci = TRUE.

`global`	A pairwise matrix of multilocus similarity coefficients.
`loci`	A list of pairwise matrices of locus similarity coefficients.

Kevin Keenan

Kosman E, Leonard K (2005) Similarity coefficients for molecular markers in studies of genetic relationships between individuals for haploid, diploid, and polyploid species. Molecular ecology, 14, 415-424.

diveRsity documentation built on May 1, 2019, 10:30 p.m.