| allCount | C++ level observed heterozyosity calculation |
| AR | Count alleles per locus |
| arHex | Bootstrapped allelic richness and heterozygosity |
| arp2gen | Fast and simple conversion of arlequin (.arp) genotype files... |
| arSample | Resample based calculation of allelic richness |
| basicStats | Claculate basic descriptive population parameters from a... |
| Big_data | Example infile for diveRsity package |
| bigDivPart | Genetic differentiation statistics and their estimators for... |
| bigPreDiv | Memory efficient diversity statistic calculations |
| bsFun | divMigrate bootstrap routine |
| bsHetCalc | C++ level observed heterozyosity calculation |
| chiCalc | Testing sample independence from genotype counts |
| corPlot | A function to plot the relationship between Gst, G'st, Theta,... |
| corPlotter | An internal function for plotting the relationship between... |
| diffCalc | A faster function for calculating genetic differentiation... |
| diffCalcHarm | C++ level function for global total and sub-population... |
| diffPlot | A function to plot pairwise statistics calculated by divPart. |
| divBasic | A function to calculate basic population parameters such as... |
| divMigrate | An experimental function for the detection of directional... |
| divMigrateOnline | An experimental function for the detection of directional... |
| divMigrateOnline_test | An experimental function for the detection of directional... |
| divOnline | A function to launch a web app version of 'diveRsity' from... |
| divPart | Genetic differentiation statistics and their estimators |
| divRatio | Calculates the standardised diversity ratios relative to a... |
| divSimCo | Similarity coefficients for co-dominant diploid genenotype... |
| expHet | C++ level observed heterozyosity calculation |
| fastDivPart | Genetic differentiation statistics and their estimators |
| fileReader | Genepop and arlequin file conversion to data.frame |
| fstOnly | A minimal function for the calculate of Weir & Cockerham's... |
| fstWC | Calculation of Weir and Cockerham's F-stats |
| genos2mat | Convert genos loci into presance absence matrices |
| glbWCcpp | C++ level function for Weir & Cockerham F-stats |
| gpSampler | Randomly sample a genepop file |
| haploDiv | A function, allowing the calculation of Weir & Cockerham's... |
| Hex | Calculates expected heterozygosity for 'divRatio' |
| hweFun | C++ level function for global total and sub-population... |
| hweTab | C++ level observed heterozyosity calculation |
| inCalc | A function to calculate locus informative for the inference... |
| inFunc | Internal calculation of Rosenberg et al's In |
| microPlexer | Launches a 'shiny' app for the arrangement of microsatellite... |
| multiplot | Winston Chang's multiplot function for arranging ggplots into... |
| myTab | C++ level allele frequency calculation |
| obsHet | C++ level observed heterozyosity calculation |
| plotter | Internal interactive plot generation |
| polyIn | A function for calculating informativeness for the inference... |
| pop_stats | Example pop_stats data frame for use in the function... |
| pre.divLowMemory | Internal differentiation calculations |
| pwDivCalc | Pairwise diversity calculations for directional migration |
| pwHCalc | C++ level calculation of total and sub-population... |
| pwHt | Pairwise directional differentiation heterozygosity... |
| pwTabMerge | C++ level function for generating pairwise hsums for fst... |
| pwWCcpp | C++ level function for pairwise Weir & Cockerham F-stats |
| rarefactor | Rarefaction method for allelic richness |
| readGenepop | A function to calculate allele frequencies from genepop... |
| readGenepopX | Internal genepop file reader |
| regroup | regroup individuals in a genepop file according to an index |
| rgp | Efficient genepop reader |
| snp2gen | Conversion function for SNP nucleotide genotype matrix to a... |
| SNPs | Example input format for 'snp2gp' function |
| statCalc | Internal differentiation calculator |
| Tab | C++ level allele frequency calculation |
| tabMerge | C++ level function for combining pw hsums |
| Test_data | Example infile for diveRsity package |
| varFunc | C++ level function for global total and sub-population... |
| writeBoot | Generate bootstrap pairwise matrices per locus |
