determine_hotspot_genes: Determine Hotspot Containing Genes
In driveR: Prioritizing Cancer Driver Genes Using Genomics Data
determine_hotspot_genes R Documentation
Determine Hotspot Containing Genes
Description
Determine Hotspot Containing Genes
Usage
determine_hotspot_genes(annovar_csv_path, hotspot_threshold = 5L)
Arguments
annovar_csv_path
path to 'ANNOVAR' csv output file
hotspot_threshold
to determine hotspot genes, the (integer) threshold
for the minimum number of cases with certain mutation in COSMIC (default = 5)
Value
vector of gene symbols of genes containing hotspot mutation(s)
driveR documentation built on Aug. 19, 2023, 5:12 p.m.
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| determine_hotspot_genes | R Documentation |
Determine Hotspot Containing Genes
Description
Determine Hotspot Containing Genes
Usage
determine_hotspot_genes(annovar_csv_path, hotspot_threshold = 5L)
Arguments
annovar_csv_path |
path to 'ANNOVAR' csv output file |
hotspot_threshold |
to determine hotspot genes, the (integer) threshold for the minimum number of cases with certain mutation in COSMIC (default = 5) |
Value
vector of gene symbols of genes containing hotspot mutation(s)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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