View source: R/core_functions.R
prioritize_driver_genes | R Documentation |
Prioritize Cancer Driver Genes
prioritize_driver_genes(features_df, cancer_type)
features_df |
the features data frame for all genes, containing the following columns:
|
cancer_type |
short name of the cancer type. All available cancer types
are listed in |
data frame with 3 columns:
HGNC gene symbol
estimated probability for each gene in features_df
of being a
cancer driver. The probabilities are calculated using the selected (via
cancer_type
) cancer type's sub-model.
prediction based on the cancer-type-specific threshold (either "driver" or "non-driver")
create_features_df
for creating the features table.
drivers_df <- prioritize_driver_genes(example_features_table, "LUAD")
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