FDR: Identification of enriched regions by controlling a given FDR...
In enRich: Analysis of Multiple ChIP-Seq Data

Description Usage Arguments Value Author(s) References See Also

Identify enriched regions by controlling false discovery rate at a specified level.

1	FDR(prob0, cr = 0.05)

`prob0`	A numeric vector. The probability of the null hypothesis being true (i.e. a region not-enriched).
`cr`	A numeric variable. The level of FDR for identifying the enriched regions.

`X`	The index of enriched regions (1: enriched, 0: not-enriched).

Yanchun Bao and Veronica Vinciotti

Bao et al. Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data. BMC Bioinformatics 2013, 14:169 DOI:10.1186/1471-2105-14-169.

See also mix, mix.joint, enrich.mix

enRich documentation built on March 13, 2020, 2:46 a.m.