enRich-package: Analysis of multiple ChIP-seq data.

In enRich: Analysis of Multiple ChIP-Seq Data

Description

enRich is an R package that performs a joint statistical modelling of ChIP-seq data, accounting for technical/biological replicates, multiple conditions and the different IP efficiencies of individual experiments.

Details

Package:	enRich
Type:	Package
Version:	3.1
Date:	2020-02-03
Depends:	R(>= 3.2.2), parallel
License:	GPL (>=2)
LazyLoad:	yes

mainfunctions: mix, mix.joint, mrf, mrf.joint, enrich.mix, enrich.mrf

Author(s)

Yanchun Bao [e-mail] and
Veronica Vinciotti [e-mail]

Maintainer: Yanchun Bao [e-mail]

References

Bao et al. Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data. BMC Bioinformatics 2013, 14:169 DOI:10.1186/1471-2105-14-169.
Bao et al. Joint modelling of ChIP-seq data via a Markov random field model, Biostatistics 2014, 15(2):296-310 DOI:10.1093/biostatistics/kxt047.

enRich documentation built on March 13, 2020, 2:46 a.m.