p300cbp.1000bp: Example Data

In enRich: Analysis of Multiple ChIP-Seq Data

Description

p300cbp.1000bp contains ChIP-seq counts in 1000bp length bins on chromosome 21 for 8 experiments. The names of the 8 experiments are CBPT0, CBPT301, CBPT302, p300T0, p300T301, p300T302, WangCBP, Wangp300. The data contain two lists, first list is the region information which contains 3 columns: Chromosome, Start, Stop and the second list are the count.

Usage

data(p300cbp.1000bp)

Format

List of 2:
region:'data.frame', 33916 obs. of 3 variables, Chromosome, Start, Stop
count: 'numeric', 33916 obs. of 8 variables, CBPT0, CBPT301, CBPT302, p300T0, p300T301, p300T302, WangCBP, Wangp300

Source

The first 6 datasets, CBPT0, CBPT301, CBPT302, p300T0, p300T301, p300T302, are from the GEO database, accession number GSE21026.

The last 2 datasets, WangCBP, Wangp300, are from the GEO database, accession number GSE15735.

References

Ramos et al. (2010) Genome-wide assessment of differential roles for p300 and CBP in transcription regulation. Nucleic Acids Research, 38(16):5396-5408.

Wang et al. (2009) Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes. Cell, 138:1019-1031.

Examples

data(p300cbp.1000bp)

enRich documentation built on March 13, 2020, 2:46 a.m.