Nothing
extract_progress_lines <- function(output) {
grep("^(MCMC|LDVB) (start|progress|done) \\|", output, value = TRUE)
}
test_that("dynamic MCMC console progress is compact and omits sigma/gamma fields", {
set.seed(123)
y <- ts(rnorm(24))
model <- polytrendMod(order = 1, m0 = mean(y), C0 = matrix(10, 1, 1))
out <- capture.output(
exdqlmMCMC(
y = y,
p0 = 0.50,
model = model,
df = 1,
dim.df = 1,
dqlm.ind = TRUE,
n.burn = 3,
n.mcmc = 4,
init.from.vb = FALSE,
verbose = TRUE,
verbose.every = 1
)
)
progress <- extract_progress_lines(out)
expect_true(any(grepl("^MCMC progress \\|", progress)))
expect_false(any(grepl("^MCMC progress \\|.*sigma=", progress)))
expect_false(any(grepl("^MCMC progress \\|.*gamma=", progress)))
expect_false(any(grepl("^MCMC done \\|.*sigma=", progress)))
expect_false(any(grepl("^MCMC done \\|.*gamma=", progress)))
})
test_that("dynamic LDVB console progress is compact and omits sigma/gamma fields", {
set.seed(124)
y <- ts(rnorm(24))
model <- polytrendMod(order = 1, m0 = mean(y), C0 = matrix(10, 1, 1))
old <- options(exdqlm.max_iter = 8)
on.exit(options(old), add = TRUE)
out <- capture.output(
exdqlmLDVB(
y = y,
p0 = 0.50,
model = model,
df = 1,
dim.df = 1,
dqlm.ind = TRUE,
sig.init = 1,
tol = 0.50,
n.samp = 30,
verbose = TRUE
)
)
progress <- extract_progress_lines(out)
expect_true(any(grepl("^LDVB progress \\|", progress)))
expect_false(any(grepl("^LDVB progress \\|.*sigma=", progress)))
expect_false(any(grepl("^LDVB progress \\|.*gamma=", progress)))
expect_false(any(grepl("^LDVB done \\|.*sigma=", progress)))
expect_false(any(grepl("^LDVB done \\|.*gamma=", progress)))
})
test_that("static MCMC console progress is compact and omits sigma/gamma fields", {
set.seed(125)
n <- 30
x <- rnorm(n)
X <- cbind(1, x)
y <- 0.4 + 0.9 * x + rnorm(n, sd = 0.3)
out <- capture.output(
exalStaticMCMC(
y = y,
X = X,
p0 = 0.50,
dqlm.ind = FALSE,
n.burn = 3,
n.mcmc = 4,
thin = 1,
init.from.vb = FALSE,
verbose = TRUE
)
)
progress <- extract_progress_lines(out)
expect_true(any(grepl("^MCMC progress \\|", progress)))
expect_false(any(grepl("^MCMC progress \\|.*sigma=", progress)))
expect_false(any(grepl("^MCMC progress \\|.*gamma=", progress)))
expect_false(any(grepl("^MCMC done \\|.*sigma=", progress)))
expect_false(any(grepl("^MCMC done \\|.*gamma=", progress)))
})
test_that("static LDVB console progress is compact and omits sigma/gamma fields", {
set.seed(126)
n <- 30
x <- rnorm(n)
X <- cbind(1, x)
y <- 0.4 + 0.9 * x + rnorm(n, sd = 0.3)
out <- capture.output(
exalStaticLDVB(
y = y,
X = X,
p0 = 0.50,
dqlm.ind = TRUE,
max_iter = 30,
n.samp = 30,
tol = 1e-12,
verbose = TRUE
)
)
progress <- extract_progress_lines(out)
expect_true(any(grepl("^LDVB progress \\|", progress)))
expect_false(any(grepl("^LDVB progress \\|.*sigma=", progress)))
expect_false(any(grepl("^LDVB progress \\|.*gamma=", progress)))
expect_false(any(grepl("^LDVB done \\|.*sigma=", progress)))
expect_false(any(grepl("^LDVB done \\|.*gamma=", progress)))
})
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