Nothing
Mqreg <- function(formula,data=NULL,smooth=c("schall","acv","fixed"),estimate=c("iprls","restricted"),lambda=1,tau=NA, robust = 1.345,adaptive=FALSE,ci=FALSE, LSMaxCores = 1)
{
smooth = match.arg(smooth)
estimate = match.arg(estimate)
if(!is.na(charmatch(tau[1],"density")) && charmatch(tau[1],"density") > 0)
{
pp <- seq(0.01, 0.99, by=0.01)
}
else if(any(is.na(tau)) || !is.vector(tau) || any(tau > 1) || any(tau < 0))
{
pp <- c(0.01,0.02,0.05,0.1,0.2,0.5,0.8,0.9,0.95,0.98, 0.99)
}
else
{
pp <- tau
}
np <- length(pp)
yy = eval(as.expression(formula[[2]]),envir=data,enclos=environment(formula))
attr(yy,"name") = deparse(formula[[2]])
m = length(yy)
design = list()
x = list()
types = list()
bnd = list()
Zspathelp = list()
nb = vector()
krig.phi = list()
center = TRUE
varying = list()
Blist = list()
Plist = list()
if (formula[[3]] == "1")
{
design[[1]] = rb(matrix(1,nrow=m,ncol=1),"parametric",center=F)
smooth = "fixed"
}
else if(formula[[3]] == ".")
{
design[[1]] = rb(data[,names(data) != all.vars(formula[[2]])],"parametric")
smooth = "fixed"
}
else
for(i in 1:length(labels(terms(formula))))
{
types[[i]] = strsplit(labels(terms(formula))[i],"(",fixed=TRUE)[[1]][1]
if(types[[i]] == labels(terms(formula))[i])
{
design[[i]] = rb(matrix(eval(parse(text=labels(terms(formula))[i]),envir=data,enclos=environment(formula)),nrow=m),"parametric")
#formula = eval(substitute(update(formula, . ~ variable2 + . - variable1),
# list(variable1 = as.name(types[[i]]),variable2 = as.name(paste("rb(",types[[i]],",'parametric')",sep="")))))
types[[i]] = "parametric"
}
else
design[[i]] = eval(parse(text=labels(terms(formula))[i]),envir=data,enclos=environment(formula))
}
nterms = length(design)
varying[[1]] = design[[1]][[9]]
if(any(!is.na(varying[[1]])))
{
B = design[[1]][[1]] * varying[[1]]
Blist[[1]] = design[[1]][[1]] * varying[[1]]
}
else
{
B = design[[1]][[1]]
Blist[[1]] = design[[1]][[1]]
}
DD = as.matrix(design[[1]][[2]])
Plist[[1]] = DD
x[[1]] = design[[1]][[3]]
names(x)[1] = design[[1]]$xname
types[[1]] = design[[1]][[4]]
bnd[[1]] = design[[1]][[5]]
Zspathelp[[1]] = design[[1]][[6]]
nb[1] = ncol(design[[1]][[1]])
krig.phi[[1]] = design[[1]][[7]]
center = center && design[[1]][[8]]
constmat = as.matrix(design[[1]]$constraint)
if(length(design) > 1)
for(i in 2:length(labels(terms(formula))))
{
varying[[i]] = design[[i]][[9]]
if(any(!is.na(varying[[i]])))
{
B = design[[i]][[1]] * varying[[i]]
Blist[[i]] = design[[i]][[1]] * varying[[i]]
}
else
{
B = cbind(B,design[[i]][[1]])
Blist[[i]] = design[[i]][[1]]
}
design[[i]][[2]] = as.matrix(design[[i]][[2]])
Plist[[i]] = design[[i]][[2]]
DD = rbind(cbind(DD,matrix(0,nrow=nrow(DD),ncol=ncol(design[[i]][[2]]))),
cbind(matrix(0,nrow=nrow(design[[i]][[2]]),ncol=ncol(DD)),design[[i]][[2]]))
constmat = rbind(cbind(constmat,matrix(0,nrow=nrow(constmat),ncol=ncol(design[[i]]$constraint))),
cbind(matrix(0,nrow=nrow(design[[i]]$constraint),ncol=ncol(constmat)),design[[i]]$constraint))
x[[i]] = design[[i]][[3]]
names(x)[i] = design[[i]]$xname
types[[i]] = design[[i]][[4]]
bnd[[i]] = design[[i]][[5]]
Zspathelp[[i]] = design[[i]][[6]]
nb[i] = ncol(design[[i]][[1]])
krig.phi[[i]] = design[[i]][[7]]
center = center && design[[i]][[8]]
}
if(center)
{
B = cbind(1,B)
DD = rbind(0,cbind(0,DD))
constmat = rbind(0,cbind(0,constmat))
}
amplitude = NULL
if(estimate == "iprls")
{
coef.vector = iprls(B,DD,yy,pp,lambda,smooth,nb,center,constmat,robust,adaptive, LSMaxCores)
amplitude = coef.vector[[3]]
}
else if(estimate == "restricted")
coef.vector = restricted(B,DD,yy,pp,lambda,smooth,nb,center,constmat,robust)
vector.a.ma.schall = coef.vector[[1]]
lala = coef.vector[[2]]
ww = coef.vector[[4]]
diag.hat = coef.vector[[5]]
fitted = B %*% vector.a.ma.schall
covariance = NULL
##############################
if(ci)
{
#W = list()
covariance = list()
for(i in 1:np)
{
res = yy - fitted[,i,drop=F]
s.tmp = median(abs(res-median(res)))/0.6745
if(adaptive)
{
s = s.tmp #* sqrt(amplitude[1:m])
cc = robust * abs(amplitude)
}
else
{
s = s.tmp
cc = robust
}
resid = res/s
W=diag(2*c(pp[i]*(0<=resid & resid<=cc)+(1-pp[i])*(-cc<=resid & resid<0)),m,m)
V=diag(c((ww[,i]^2)*(resid^2)),m,m)
lahmda = rep(lala[,i],times=nb)
if(center)
lahmda = c(0,lahmda)
K = lahmda * t(DD) %*% DD
helpmat = solve(t(B)%*%diag((1/s),m)%*%W%*%B + K)
Epsi2=sum((ww[,i]*resid)^2)/(m-ncol(B))
Epsi=(sum(2/s*(pp[i]*(0<=resid & resid<=cc)+(1-pp[i])*(-cc<=resid & resid<0)))/m)
psi = abs(-(1-pp[i])*cc*(resid< -cc)+(1-pp[i])* resid*(resid <0 & resid>=-cc)+pp[i]* resid*(resid>=0 & resid <cc)+pp[i]*cc*(resid>=cc))
covariance[[i]] = (m/(m-ncol(B))) * helpmat %*% (t(B) %*% diag(psi[,1])^2 %*% diag(1/(1-diag.hat[,i])) %*% B) %*% helpmat
}
}
##############################
Z <- list()
coefficients <- list()
final.lambdas <- list()
helper <- list()
if(center)
{
intercept = vector.a.ma.schall[1,]
B = B[,-1,drop=FALSE]
vector.a.ma.schall = vector.a.ma.schall[-1,,drop=FALSE]
}
else
intercept = rep(0,np)
for(k in 1:length(design))
{
final.lambdas[[k]] = lala[k,]
names(final.lambdas)[k] = design[[k]]$xname
partbasis = (sum(nb[0:(k-1)])+1):(sum(nb[0:k]))
if(types[[k]] == "pspline")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] <- design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "markov")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = list(bnd[[k]],Zspathelp[[k]])
for(i in 1:np)
{
Z[[k]][,i] = design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "2dspline")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] = design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "radial")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] = design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "krig")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = krig.phi[[k]]
for(i in 1:np)
{
Z[[k]][,i] = design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "random")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] <- design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "ridge")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] <- design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "parametric")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] <- design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
else if(types[[k]] == "special")
{
Z[[k]] <- matrix(NA, m, np)
coefficients[[k]] = matrix(NA,nrow=nb[k],ncol=np)
helper[[k]] = NA
for(i in 1:np)
{
Z[[k]][,i] <- design[[k]][[1]] %*% vector.a.ma.schall[partbasis,i,drop=FALSE] + intercept[i]
coefficients[[k]][,i] = vector.a.ma.schall[partbasis,i,drop=FALSE]
}
}
names(Z)[k] = design[[k]]$xname
names(coefficients)[k] = design[[k]]$xname
}
desmat = B
if(center)
desmat = cbind(1,B)
result = list("lambda"=final.lambdas,"intercepts"=intercept,"coefficients"=coefficients,"values"=Z,"response"=yy,"covariates"=x,
"formula"=formula,"asymmetries"=pp,"effects"=types,"helper"=helper,"design"=desmat,"bases"=design,"fitted"=fitted,"amplitude"=amplitude,"covmat"=covariance)
result$predict <- function(newdata=NULL)
{
BB = list()
values = list()
bmat = NULL
for(k in 1:length(coefficients))
{
BB[[k]] = predict(design[[k]],newdata)
values[[k]] <- BB[[k]] %*% coefficients[[k]]
values[[k]] = t(apply(values[[k]],1,function(x) { x + intercept } ))
bmat = cbind(bmat,BB[[k]])
}
if(center)
{
bmat = cbind(1,bmat)
vector.a.ma.schall = rbind(intercept,vector.a.ma.schall)
}
fitted = bmat %*% vector.a.ma.schall
names(values) = names(coefficients)
list("fitted"=fitted,"values"=values)
}
class(result) = c("expectreg",estimate)
result
}
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