NEWS.md

In fbar: An Extensible Approach to Flux Balance Analysis

fbar 0.6.0

• Fix for new CRAN check for 'return' without '()'
• Lots of changes to take into account changes in dependencies
• Simplified installation documentation

fbar 0.5.2

• Fix to getBiGG function
• Fix to vignette

fbar 0.4.4

• New function for retrieving models from BiGG
• Changes to model data files
• New data file to help specify exchange reactions
• Changed some function argument defaults

fbar 0.3.4

• Test updates and tidying to work with new version of ROI
• New tests
• Spelling corrections
• Moving to assuming availability of ecos solver. All other solvers still supported

fbar 0.3.3

• Spelling corrections

fbar 0.3.2

• Minor updates for Cran release

fbar 0.3.1

• Created website using pkgdown

fbar 0.3.0

• Moved to new NSE framework

fbar 0.2.2

• Deprecated expanded_to_gurobi, expanded_to_glpk and reactiontbl_to_gurobi. ROI will now be the only backend.

fbar 0.2.1

• Updated and corrected some test code
• Added test and fix for situation where metabolite is used multiple times in one reaction string
• Small updates to vignettes and readme

fbar 0.2.0

• Added new functions for metabolite parsing
• Added more documentation

fbar 0.1.23

• Added DONTRUN to some examples which take too long on some platforms

fbar 0.1.19

• New vignette

fbar 0.1.18

• variety of bug fixes

fbar 0.1.17

• Started moving to using ROI.plugin.ecos for examples and tests, since it has no dependencies
• New function to convert from an expanded model back to a reaction table
• Fixed a bug in the total flux minimization code of find_fluxes_df

fbar 0.1.16

• Changes to tests to reduce chatter further

fbar 0.1.15

• Description changes to remove notes

fbar 0.1.14

• Changed the title
• Changed the description
• Typo fixed

fbar 0.1.13

• Checks and filters in tests, vignette and examples to remove implicit dependency on ROI.plugin.glpk.
• Other pdates and improvements to documentation and examples.
• Updated tests for cleaner output

fbar 0.1.12

• Tweaks and updates for CRAN submission

fbar 0.1.9

• Started using travis for integration

fbar 0.1.8

• Test updates

fbar 0.1.1

• Changed optimization framework - can now use one of a choice of optimizers
• Lots more documentation
• Name changes and refactoring

fbar documentation built on Sept. 2, 2020, 5:08 p.m.