findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

Provides tools to estimate the genome size of polyploid species using k-mer frequencies. This package includes functions to process k-mer frequency data and perform genome size estimation by fitting k-mer frequencies with a normal distribution model. It supports handling of complex polyploid genomes and offers various options for customizing the estimation process. The basic method 'findGSE' is detailed in Sun, Hequan, et al. (2018) <doi:10.1093/bioinformatics/btx637>.

Package details

AuthorLaiyi Fu [aut, cre], Hequan Sun [aut]
MaintainerLaiyi Fu <>
LicenseGPL (>= 2)
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:

Try the findGSEP package in your browser

Any scripts or data that you put into this service are public.

findGSEP documentation built on May 29, 2024, 3:35 a.m.