kmer_count_modify_raw: Modify Raw K-mer Frequency Before Fitting

In findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

Modify Raw K-mer Frequency Before Fitting

Description

This function modifies the raw k-mer frequency before fitting, adjusting either the left or right part based on the peak position.

Usage

kmer_count_modify_raw(start, end, left_right, histx)

Arguments

start	An integer indicating the starting position (does not include the peak position).
end	An integer indicating the ending position (does not include the peak position).
left_right	An integer indicating whether to modify the left part (0) or the right part (1).
histx	A data frame representing the raw k-mer histogram.

Value

A modified data frame with adjusted raw k-mer frequencies.

Examples

histx <- data.frame(V1 = 1:10, V2 = c(100, 200, 300, 400, 500, 400, 300, 200, 100, 50))
histx_new <- kmer_count_modify_raw(3, 7, 0, histx)

findGSEP documentation built on May 29, 2024, 3:35 a.m.