error_minimize2: Tuning Final Fitting for Heterozygous Genomes
In findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

error_minimize2

R Documentation

Tuning Final Fitting for Heterozygous Genomes

Description

This function tunes the final fitting for heterozygous genomes by adjusting the delta values for heterozygous and homozygous regions.

Usage

error_minimize2(tooptimize, h_het, h_hom, h_target)

Arguments

`tooptimize`	A numeric vector containing the scale factors to optimize.
`h_het`	A numeric vector representing the raw fitting for the heterozygous region.
`h_hom`	A numeric vector representing the raw fitting for the homozygous region.
`h_target`	A numeric vector representing the target k-mer frequency.

Value

A numeric value representing the minimized difference.

Examples


tooptimize <- c(0.5)
h_het <- rnorm(100)
h_hom <- rnorm(100)
h_target <- rnorm(100)
diff <- error_minimize2(tooptimize, h_het, h_hom, h_target)
print(diff)

findGSEP documentation built on May 29, 2024, 3:35 a.m.