filter_peaks_raw: Filter Peaks from Raw K-mer Histogram

In findGSEP: Estimate Genome Size of Polyploid Species Using k-Mer Frequencies

Filter Peaks from Raw K-mer Histogram

Description

This function filters peaks from a raw k-mer histogram to find a major peak with enough support information on both sides.

Usage

filter_peaks_raw(peaks, histo)

Arguments

peaks	A data frame containing the peaks from the histogram.
histo	A data frame representing the raw k-mer histogram.

Value

A data frame with filtered peaks.

Examples

peaks <- data.frame(V1=1:20, V2=sample(1:10, 20, replace=TRUE))
histo <- data.frame(V1=1:100, V2=sample(1:10, 100, replace=TRUE))
filtered_peaks <- filter_peaks_raw(peaks, histo)
print(filtered_peaks)

findGSEP documentation built on May 29, 2024, 3:35 a.m.