flexsurv: Flexible Parametric Survival and Multi-State Models

Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.

AuthorChristopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Date of publication2016-05-11 12:06:27
MaintainerChristopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
LicenseGPL (>= 2)
Version1.0.0
https://github.com/chjackson/flexsurv-dev

View on CRAN

Man pages

basis: Natural cubic spline basis

bc: Breast cancer survival data

bos: Bronchiolitis obliterans syndrome after lung transplants

flexsurv-package: flexsurv: Flexible parametric survival and multi-state models

flexsurvreg: Flexible parametric regression for time-to-event data

flexsurvspline: Flexible survival regression using the Royston/Parmar spline...

GenF: Generalized F distribution

GenF.orig: Generalized F distribution (original parameterisation)

GenGamma: Generalized gamma distribution

GenGamma.orig: Generalized gamma distribution (original parameterisation)

Gompertz: The Gompertz distribution

hazard: Hazard and cumulative hazard functions

lines.flexsurvreg: Add fitted flexible survival curves to a plot

Llogis: The log-logistic distribution

model.frame.flexsurvreg: Extract original data from 'flexsurvreg' objects.

msfit.flexsurvreg: Cumulative intensity function for parametric multi-state...

normboot.flexsurvreg: Simulate from the asymptotic normal distribution of parameter...

pars.fmsm: Transition-specific parameters in a flexible parametric...

plot.flexsurvreg: Plots of fitted flexible survival models

pmatrix.fs: Transition probability matrix from a fully-parametric,...

pmatrix.simfs: Transition probability matrix from a fully-parametric,...

qgeneric: Generic function to find quantiles of a distribution

sim.fmsm: Simulate paths through a fully parametric semi-Markov...

summary.flexsurvreg: Summaries of fitted flexible survival models

Survspline: Royston/Parmar spline survival distribution

totlos.fs: Total length of stay in particular states for a...

totlos.simfs: Expected total length of stay in specific states, from a...

unroll.function: Convert a function with matrix arguments to a function with...

WeibullPH: Weibull distribution in proportional hazards parameterisation

Files in this package

flexsurv
flexsurv/inst
flexsurv/inst/CITATION
flexsurv/inst/NEWS
flexsurv/inst/doc
flexsurv/inst/doc/flexsurv-examples.pdf
flexsurv/inst/doc/flexsurv.R
flexsurv/inst/doc/flexsurv-examples.R
flexsurv/inst/doc/flexsurv.pdf
flexsurv/tests
flexsurv/tests/test_base.R
flexsurv/tests/testthat
flexsurv/tests/testthat/test_utils.R
flexsurv/tests/testthat/test_outputs.R
flexsurv/tests/testthat/test_flexsurvreg.R
flexsurv/tests/testthat/test_custom.R
flexsurv/tests/testthat/test_spline.R
flexsurv/tests/testthat/test_deriv.R
flexsurv/tests/testthat/test_mstate.R
flexsurv/NAMESPACE
flexsurv/data
flexsurv/data/bc.rda
flexsurv/data/bc.txt.gz
flexsurv/data/bosms3.rda
flexsurv/data/bosms4.rda
flexsurv/Changelog
flexsurv/R
flexsurv/R/Llogis.R flexsurv/R/utils.R flexsurv/R/mstate.R flexsurv/R/Gompertz.R flexsurv/R/custom.R flexsurv/R/flexsurvreg.R flexsurv/R/spline.R flexsurv/R/fracpoly.R flexsurv/R/GenGamma.R flexsurv/R/deriv.R flexsurv/R/GenF.R
flexsurv/vignettes
flexsurv/vignettes/flexsurv.bib
flexsurv/vignettes/bosmsm.pdf
flexsurv/vignettes/flexsurv-examples.Rnw
flexsurv/vignettes/flexsurv.Rnw
flexsurv/MD5
flexsurv/build
flexsurv/build/vignette.rds
flexsurv/DESCRIPTION
flexsurv/man
flexsurv/man/totlos.fs.Rd flexsurv/man/GenF.Rd flexsurv/man/basis.Rd flexsurv/man/GenGamma.orig.Rd flexsurv/man/sim.fmsm.Rd flexsurv/man/model.frame.flexsurvreg.Rd flexsurv/man/Gompertz.Rd flexsurv/man/pmatrix.simfs.Rd flexsurv/man/pars.fmsm.Rd flexsurv/man/flexsurvreg.Rd flexsurv/man/summary.flexsurvreg.Rd flexsurv/man/Llogis.Rd flexsurv/man/totlos.simfs.Rd flexsurv/man/flexsurvspline.Rd flexsurv/man/plot.flexsurvreg.Rd flexsurv/man/bc.Rd flexsurv/man/hazard.Rd flexsurv/man/WeibullPH.Rd flexsurv/man/normboot.flexsurvreg.Rd flexsurv/man/msfit.flexsurvreg.Rd flexsurv/man/pmatrix.fs.Rd flexsurv/man/GenGamma.Rd flexsurv/man/flexsurv-package.Rd flexsurv/man/bos.Rd flexsurv/man/GenF.orig.Rd flexsurv/man/qgeneric.Rd flexsurv/man/Survspline.Rd flexsurv/man/lines.flexsurvreg.Rd flexsurv/man/unroll.function.Rd

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