flexsurv: Flexible Parametric Survival and Multi-State Models

Flexible parametric models for time-to-event data, including the Royston-Parmar spline model, generalized gamma and generalized F distributions. Any user-defined parametric distribution can be fitted, given at least an R function defining the probability density or hazard. There are also tools for fitting and predicting from fully parametric multi-state models.

Author
Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
Date of publication
2016-05-11 12:06:27
Maintainer
Christopher Jackson <chris.jackson@mrc-bsu.cam.ac.uk>
License
GPL (>= 2)
Version
1.0.0
URLs

View on CRAN

Man pages

basis
Natural cubic spline basis
bc
Breast cancer survival data
bos
Bronchiolitis obliterans syndrome after lung transplants
flexsurv-package
flexsurv: Flexible parametric survival and multi-state models
flexsurvreg
Flexible parametric regression for time-to-event data
flexsurvspline
Flexible survival regression using the Royston/Parmar spline...
GenF
Generalized F distribution
GenF.orig
Generalized F distribution (original parameterisation)
GenGamma
Generalized gamma distribution
GenGamma.orig
Generalized gamma distribution (original parameterisation)
Gompertz
The Gompertz distribution
hazard
Hazard and cumulative hazard functions
lines.flexsurvreg
Add fitted flexible survival curves to a plot
Llogis
The log-logistic distribution
model.frame.flexsurvreg
Extract original data from 'flexsurvreg' objects.
msfit.flexsurvreg
Cumulative intensity function for parametric multi-state...
normboot.flexsurvreg
Simulate from the asymptotic normal distribution of parameter...
pars.fmsm
Transition-specific parameters in a flexible parametric...
plot.flexsurvreg
Plots of fitted flexible survival models
pmatrix.fs
Transition probability matrix from a fully-parametric,...
pmatrix.simfs
Transition probability matrix from a fully-parametric,...
qgeneric
Generic function to find quantiles of a distribution
sim.fmsm
Simulate paths through a fully parametric semi-Markov...
summary.flexsurvreg
Summaries of fitted flexible survival models
Survspline
Royston/Parmar spline survival distribution
totlos.fs
Total length of stay in particular states for a...
totlos.simfs
Expected total length of stay in specific states, from a...
unroll.function
Convert a function with matrix arguments to a function with...
WeibullPH
Weibull distribution in proportional hazards parameterisation

Files in this package

flexsurv
flexsurv/inst
flexsurv/inst/CITATION
flexsurv/inst/NEWS
flexsurv/inst/doc
flexsurv/inst/doc/flexsurv-examples.pdf
flexsurv/inst/doc/flexsurv.R
flexsurv/inst/doc/flexsurv-examples.R
flexsurv/inst/doc/flexsurv.pdf
flexsurv/tests
flexsurv/tests/test_base.R
flexsurv/tests/testthat
flexsurv/tests/testthat/test_utils.R
flexsurv/tests/testthat/test_outputs.R
flexsurv/tests/testthat/test_flexsurvreg.R
flexsurv/tests/testthat/test_custom.R
flexsurv/tests/testthat/test_spline.R
flexsurv/tests/testthat/test_deriv.R
flexsurv/tests/testthat/test_mstate.R
flexsurv/NAMESPACE
flexsurv/data
flexsurv/data/bc.rda
flexsurv/data/bc.txt.gz
flexsurv/data/bosms3.rda
flexsurv/data/bosms4.rda
flexsurv/Changelog
flexsurv/R
flexsurv/R/Llogis.R
flexsurv/R/utils.R
flexsurv/R/mstate.R
flexsurv/R/Gompertz.R
flexsurv/R/custom.R
flexsurv/R/flexsurvreg.R
flexsurv/R/spline.R
flexsurv/R/fracpoly.R
flexsurv/R/GenGamma.R
flexsurv/R/deriv.R
flexsurv/R/GenF.R
flexsurv/vignettes
flexsurv/vignettes/flexsurv.bib
flexsurv/vignettes/bosmsm.pdf
flexsurv/vignettes/flexsurv-examples.Rnw
flexsurv/vignettes/flexsurv.Rnw
flexsurv/MD5
flexsurv/build
flexsurv/build/vignette.rds
flexsurv/DESCRIPTION
flexsurv/man
flexsurv/man/totlos.fs.Rd
flexsurv/man/GenF.Rd
flexsurv/man/basis.Rd
flexsurv/man/GenGamma.orig.Rd
flexsurv/man/sim.fmsm.Rd
flexsurv/man/model.frame.flexsurvreg.Rd
flexsurv/man/Gompertz.Rd
flexsurv/man/pmatrix.simfs.Rd
flexsurv/man/pars.fmsm.Rd
flexsurv/man/flexsurvreg.Rd
flexsurv/man/summary.flexsurvreg.Rd
flexsurv/man/Llogis.Rd
flexsurv/man/totlos.simfs.Rd
flexsurv/man/flexsurvspline.Rd
flexsurv/man/plot.flexsurvreg.Rd
flexsurv/man/bc.Rd
flexsurv/man/hazard.Rd
flexsurv/man/WeibullPH.Rd
flexsurv/man/normboot.flexsurvreg.Rd
flexsurv/man/msfit.flexsurvreg.Rd
flexsurv/man/pmatrix.fs.Rd
flexsurv/man/GenGamma.Rd
flexsurv/man/flexsurv-package.Rd
flexsurv/man/bos.Rd
flexsurv/man/GenF.orig.Rd
flexsurv/man/qgeneric.Rd
flexsurv/man/Survspline.Rd
flexsurv/man/lines.flexsurvreg.Rd
flexsurv/man/unroll.function.Rd