fslr: Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
Version 2.12

Wrapper functions that interface with 'FSL' , a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'FSL' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'FSL' command and returns an R object of class 'nifti' if desired.

Browse man pages Browse package API and functions Browse package files

AuthorJohn Muschelli <muschellij2@gmail.com>
Date of publication2017-03-07 01:06:25
MaintainerJohn Muschelli <muschellij2@gmail.com>
LicenseGPL-3
Version2.12
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("fslr")

Man pages

aux_file-methods: Extract Image aux.file attribute
bitpix-methods: Extract Image bitpix attribute
cal_max-methods: Extract Image cal.max attribute
cal_min-methods: Extract Image cal.min attribute
check_file: Wrapper for getForms with filename
checkout: Determine of Q and S forms are consistent
data_type-methods: Extract Image data_type attribute
datatype-methods: Extract Image datatype attribute
descrip-methods: Extract Image descrip attribute
dim_-methods: Extract Image dim_ attribute
download_fsl: Download FSL
dtifit: DTI Fitting Procedure from FSL
eddy_correct: Eddy Current Correction
fast: FSL FAST
fast.help: FAST help
flirt: Register using FLIRT
flirt_apply: Apply Warp from FLIRT
flirt.help: FLIRT help
fnirt: Register using FNIRT
fnirt.help: FNIRT help
fnirt_with_affine: Register using FNIRT, but doing Affine Registration as well
fnirt_with_affine_apply: Applies FLIRT then FNIRT transformations
fslabs: Absolute Value Image using FSL
fslabs.help: fslabs Help
fslacos: Arc Cosine Transform Image using FSL
fslacos.help: fslacos Help
fsladd: Add Images using FSL
fsladd.help: fsladd Help
fsl_anat: FSL Anatomical Processing Script
fsl_anat.help: fsl_anat help
fsl_applywarp: Apply Warp from FNIRT
fsl_applywarp.help: FSL applywarp help
fslasin: Arc Sine Transform Image using FSL
fslasin.help: fslasin Help
fslatan: Arc Tangent Transform Image using FSL
fslatan.help: fslatan Help
fsl_atlas_dir: Get FSL's Standard Data Directory
fsl_avscale: Scale Affine Matrix using 'avscale'
fslbet: Use FSL's Brain Extraction Tool (BET)
fslbet.help: Help for FSL BET
fsl_biascorrect: FSL Bias Correct
fslbin: Binarize Image using FSL
fslbin.help: fslbin Help
fsl_bin_tab: Quick Tabulation for logical images
fslbinv: Binarized Inverse Image using FSL
fslbinv.help: fslbinv Help
fslchfiletype: FSL Change file type
fslchfiletype.help: fslchfiletype help
fslcmd: FSL Command Wrapper
fslcog: Image Center of Gravity (FSL)
fslcos: Cosine Transform Image using FSL
fslcos.help: fslcos Help
fslcpgeom: FSL Copy Geometry
fslcpgeom.help: fslcpgeom help
fsl_data_dir: Get FSL's Data Directory
fsl_dice: Calculate Dice Coefficient of 2 Binary images
fsldilate: Dilate image using FSL
fsldir: Get FSL's Directory
fsldiv: Divide Images using FSL
fsldiv.help: fsldiv Help
fsledge: Edge Strength Image using FSL
fsledge.help: fsledge Help
fslentropy: Image Mean Entropy
fslerode: Erode image using FSL
fslerode.help: fslerode Help
fslexp: Exponentiate Image using FSL
fslexp.help: fslexp Help
fslfill: Fill image holes
fslfill2: Fill image holes with dilation then erosion
fslfill.help: fslfill Help
fslhd: Get NIfTI header using FSL
fslhd.help: FSLhd help
fslhd.parse: Parse FSL Header
fslhelp: Wrapper for getting fsl help
fslindex: Index Image using FSL
fslindex.help: fslindex Help
fsllog: Log Transform Image using FSL
fsllog.help: fsllog Help
fslmask: Mask image using FSL
fslmask.help: fslmask Help
fslmaths: FSL Maths
fslmaths.help: FSL Maths Help
fslmean: Image Mean
fslmerge: Merge images using FSL
fslmerge.help: FSLMerge help
fslmin_max: Get min/max of an image
fslmul: Multiply Images using FSL
fslmul.help: fslmul Help
fslnan: Replace NaNs in Image using FSL
fslnan.help: fslnan Help
fslnanm: Mask NaNs in Image using FSL
fslnanm.help: fslnanm Help
fslorient: FSL Orient
fslorienter: Wrapper for FSL Get Orientation
fslorient.help: fslorient help
fslorient_wrap: FSL Orientation Wrappers
fslrand: Add Random Uniform Noise Image using FSL
fslrand.help: fslrand Help
fslrandn: Add Random Standard Guassian Noise Image using FSL
fslrandn.help: fslrandn Help
fslrange: Get range of an image
fslrecip: Reciprocal Image using FSL
fslrecip.help: fslrecip Help
fslrem: Modulus Remainder of 2 Images using FSL
fslrem.help: fslrem Help
fslreorient2std: FSL Orient to MNI
fslreorient2std.help: fslreorient2std help
fslrobustfov: FSL Robust Field of View
fslrobustfov.help: FSL Robust Field of View Help
fslroi: FSL ROI
fslsd: Image Standard Deviation
fslsin: Sine Transform Image using FSL
fslsin.help: fslsin Help
fslslicetimer: FSL Slice Timing Correction
fslsmooth: Gaussian smooth image using FSL
fslsmooth.help: fslsmooth Help
fslsmooth_in_mask: Smooth Image Within a Mask Only
fslsplit: Split images using FSL
fslsplit.help: FSL Split help
fslsqr: Square Image using FSL
fslsqr.help: fslsqr Help
fslsqrt: Square Root Image using FSL
fslsqrt.help: fslsqrt Help
fslstats: FSL Stats
fslstats.help: FSL Stats Help
fsl_std_dir: Get FSL's Standard Data Directory
fslsub: Subtract Images using FSL
fslsub2: Subsample image by factor of 2
fslsub2.help: fslsub2 Help
fslsub.help: fslsub Help
fslsum: FSL Sum
fslswapdim: FSL Swap Dimensions
fslswapdim.help: fslswapdim help
fsltan: Tangent Transform Image using FSL
fsltan.help: fsltan Help
fslthresh: Threshold an image
fslthresh.help: fslthresh Help
fslval: Get value from FSL header
fslval.help: fslval help
fsl_version: Find FSL Version
fslview: Open image in FSLView
fslview.help: FSLView help
fslvol: FSL Volume in mL (or cubic centimeters)
fslvolume: Image Volume
getForms: Get Q and S Forms of orientation matrix
get.fsl: Create command declaring FSLDIR
get.fsloutput: Determine FSL output type
get.imgext: Determine extension of image based on FSLOUTPUTTYPE
have.fsl: Logical check if FSL is accessible
intent_code-methods: Extract Image intent_code attribute
intent_name-methods: Extract Image intent_name attribute
intent_p1-methods: Extract Image intent_p1 attribute
intent_p2-methods: Extract Image intent_p2 attribute
intent_p3-methods: Extract Image intent_p3 attribute
magic-methods: Extract Image magic attribute
mcflirt: FSL Motion Correction
mcflirt.help: MCFLIRT help
melodic: Run MELODIC ICA
melodic.help: MELODIC help
mid_sagittal_align: Mid-Sagittal Plane Alignment
mni_fname: Construct MNI Filename
mni_img: Read MNI Filename
orientation-methods: Extract NIfTI 3D Image Orientation
parse_avscale: Parse output from 'avscale'
pixdim-methods: Extract Image pixdim attribute
probtrackx: Probabilistic diffusion tractography with multiple fibre...
qform_code-methods: Extract Image qform_code attribute
readrpi: Read NIfTI file reoriented to RPI
reverse_rpi_orient: Reverse Reorientation an Image to RPI orientation
rpi_orient: Reorient an Image to RPI orientation
run_first_all: Run FIRST All
run_first_all.help: Run FIRST All Help
scl_inter-methods: Extract Image scl_inter attribute
scl_slope-methods: Extract Image scl_slope attribute
sform_code-methods: Extract Image sform_code attribute
sizeof_hdr-methods: Extract Image sizeof_hdr attribute
slice_code-methods: Extract Image slice_code attribute
slice_duration-methods: Extract Image slice_duration attribute
slice_end-methods: Extract Image slice_end attribute
slice_start-methods: Extract Image slice_start attribute
susan: FSL SUSAN noise reduction
susan.help: FSL SUSAN Help
toffset-methods: Extract Image toffset attribute
topup: topup - calling FSL topup
vox_offset-methods: Extract Image vox_offset attribute
xfibres: Bayesian Estimation of Diffusion Parameters Obtained using...

Functions

aux.file,character-method Man page
aux.file-methods Man page
avscale Man page Source code
bedpostx Man page
bitpix,character-method Man page
bitpix-methods Man page
cal.max,character-method Man page
cal.max-methods Man page
cal.min,character-method Man page
cal.min-methods Man page
check_file Man page Source code
check_sform Source code
check_sform_file Source code
checkout Man page Source code
data_type,character-method Man page
data_type-methods Man page
datatype,character-method Man page
datatype-methods Man page
descrip,character-method Man page
descrip-methods Man page
dim_,character-method Man page
dim_-methods Man page
download_fsl Man page Source code
dtifit Man page Source code
eddy_correct Man page Source code
fast Man page Source code
fast.help Man page Source code
flirt Man page Source code
flirt.help Man page Source code
flirt_apply Man page Source code
flirt_apply.help Man page
fnirt Man page Source code
fnirt.help Man page Source code
fnirt_with_affine Man page Source code
fnirt_with_affine_apply Man page Source code
fsl_abs Man page Source code
fsl_acos Man page Source code
fsl_add Man page Source code
fsl_anat Man page Source code
fsl_anat.help Man page Source code
fsl_applywarp Man page Source code
fsl_applywarp.help Man page Source code
fsl_asin Man page Source code
fsl_atan Man page Source code
fsl_atlas_dir Man page Source code
fsl_avscale Man page Source code
fsl_bet Man page Source code
fsl_biascorrect Man page Source code
fsl_bin Man page Source code
fsl_bin_tab Man page Source code
fsl_binv Man page Source code
fsl_cos Man page Source code
fsl_data_dir Man page Source code
fsl_dice Man page Source code
fsl_dilate Man page Source code
fsl_dir Man page Man page Source code
fsl_div Man page Source code
fsl_edge Man page Source code
fsl_erode Man page Source code
fsl_exp Man page Source code
fsl_fill Man page Source code
fsl_index Man page Source code
fsl_log Man page Source code
fsl_mask Man page Source code
fsl_maths Man page Source code
fsl_merge Man page Source code
fsl_mul Man page Source code
fsl_nan Man page Source code
fsl_nanm Man page Source code
fsl_rand Man page Source code
fsl_randn Man page Source code
fsl_recip Man page Source code
fsl_rem Man page Source code
fsl_robustfov Man page Source code
fsl_slicetimer Man page Source code
fsl_smooth Man page Source code
fsl_smooth_in_mask Man page Source code
fsl_split Man page Source code
fsl_sqr Man page Source code
fsl_sqrt Man page Source code
fsl_std_dir Man page Source code
fsl_sub Man page Source code
fsl_sub2 Man page Source code
fsl_swapdim Man page Source code
fsl_tan Man page Source code
fsl_thresh Man page Source code
fsl_topup Man page Source code
fsl_version Man page Source code
fslabs Man page Source code
fslabs.help Man page Source code
fslacos Man page Source code
fslacos.help Man page Source code
fsladd Man page Source code
fsladd.help Man page Source code
fslasin Man page Source code
fslasin.help Man page Source code
fslatan Man page Source code
fslatan.help Man page Source code
fslbet Man page Source code
fslbet.help Man page Source code
fslbin Man page Source code
fslbin.help Man page Source code
fslbinv Man page Source code
fslbinv.help Man page Source code
fslchfiletype Man page Source code
fslchfiletype.help Man page Source code
fslcmd Man page Source code
fslcog Man page Source code
fslcos Man page Source code
fslcos.help Man page Source code
fslcpgeom Man page Source code
fslcpgeom.help Man page Source code
fsldilate Man page Source code
fsldir Man page Source code
fsldiv Man page Source code
fsldiv.help Man page Source code
fsledge Man page Source code
fsledge.help Man page Source code
fslentropy Man page Source code
fslentropy.help Man page
fslerode Man page Source code
fslerode.help Man page Source code
fslexp Man page Source code
fslexp.help Man page Source code
fslfill Man page Source code
fslfill.help Man page Source code
fslfill2 Man page Source code
fslgetorient Man page Source code
fslgetqform Man page Source code
fslgetqformcode Man page Source code
fslgetsform Man page Source code
fslgetsformcode Man page Source code
fslhd Man page Source code
fslhd.help Man page Source code
fslhd.parse Man page Source code
fslhelp Man page Source code
fslindex Man page Source code
fslindex.help Man page Source code
fsllog Man page Source code
fsllog.help Man page Source code
fslmask Man page Source code
fslmask.help Man page Source code
fslmaths Man page Source code
fslmaths.help Man page Source code
fslmax Man page Source code
fslmean Man page Source code
fslmean.help Man page
fslmerge Man page Source code
fslmerge.help Man page Source code
fslmin Man page Source code
fslmul Man page Source code
fslmul.help Man page Source code
fslnan Man page Source code
fslnan.help Man page Source code
fslnanm Man page Source code
fslnanm.help Man page Source code
fslorient Man page Source code
fslorient.help Man page Source code
fslorienter Man page Source code
fslrand Man page Source code
fslrand.help Man page Source code
fslrandn Man page Source code
fslrandn.help Man page Source code
fslrange Man page Source code
fslrange.help Man page
fslrecip Man page Source code
fslrecip.help Man page Source code
fslrem Man page Source code
fslrem.help Man page Source code
fslreorient2std Man page Source code
fslreorient2std.help Man page Source code
fslrobustfov Man page Source code
fslrobustfov.help Man page Source code
fslroi Man page Source code
fslsd Man page Source code
fslsd.help Man page
fslsin Man page Source code
fslsin.help Man page Source code
fslslicetimer Man page Source code
fslsmooth Man page Source code
fslsmooth.help Man page Source code
fslsmooth_in_mask Man page Source code
fslsplit Man page Source code
fslsplit.help Man page Source code
fslsqr Man page Source code
fslsqr.help Man page Source code
fslsqrt Man page Source code
fslsqrt.help Man page Source code
fslstats Man page Source code
fslstats.help Man page Source code
fslsub Man page Source code
fslsub.help Man page Source code
fslsub2 Man page Source code
fslsub2.help Man page Source code
fslsum Man page Source code
fslswapdim Man page Source code
fslswapdim.help Man page Source code
fsltan Man page Source code
fsltan.help Man page Source code
fslthresh Man page Source code
fslthresh.help Man page Source code
fslval Man page Source code
fslval.help Man page Source code
fslversion Man page Source code
fslview Man page Source code
fslview.help Man page Source code
fslvol Man page Source code
fslvolume Man page Source code
get.fsl Man page Source code
get.fsloutput Man page Source code
get.imgext Man page Source code
getForms Man page Source code
get_fsl Man page Source code
have.fsl Man page Source code
have_fsl Man page Source code
intent_code,character-method Man page
intent_code-methods Man page
intent_name,character-method Man page
intent_name-methods Man page
intent_p1,character-method Man page
intent_p1-methods Man page
intent_p2,character-method Man page
intent_p2-methods Man page
intent_p3,character-method Man page
intent_p3-methods Man page
magic,character-method Man page
magic-methods Man page
mcflirt Man page Source code
mcflirt.help Man page Source code
melodic Man page Source code
melodic.help Man page Source code
mid_sagittal_align Man page Source code
mni_fname Man page Source code
mni_img Man page Source code
parse_avscale Man page Source code
pixdim,character-method Man page
pixdim-methods Man page
probtrackx Man page Source code
qform,character Man page
qform,character-method Man page
qform_code,character-method Man page
qform_code-methods Man page
readrpi Man page Source code
reverse_rpi_orient Man page Source code
reverse_rpi_orient_file Man page Source code
rpi_orient Man page Source code
rpi_orient_file Man page Source code
run_first_all Man page Source code
run_first_all.help Man page Source code
scl_inter,character-method Man page
scl_inter-methods Man page
scl_slope,character-method Man page
scl_slope-methods Man page
sform,character Man page
sform,character-method Man page
sform_code,character-method Man page
sform_code-methods Man page
sizeof_hdr,character-method Man page
sizeof_hdr-methods Man page
slice_code,character-method Man page
slice_code-methods Man page
slice_duration,character-method Man page
slice_duration-methods Man page
slice_end,character-method Man page
slice_end-methods Man page
slice_start,character-method Man page
slice_start-methods Man page
susan Man page Source code
susan.help Man page Source code
toffset,character-method Man page
toffset-methods Man page
topup Man page Source code
vox_offset,character-method Man page
vox_offset-methods Man page
xfibres Man page Source code

Files

inst
inst/CITATION
inst/doc
inst/doc/dti_data.Rmd
inst/doc/dti_data.R
inst/doc/fslr.R
inst/doc/fslr.html
inst/doc/dti_data.html
inst/doc/fslr.Rmd
NAMESPACE
R
R/intent_code.R
R/fslvol.R
R/fslmin_max.R
R/fsl_edge.R
R/fslrecip.R
R/scl_inter.R
R/fslnanm.R
R/fsl_dilate.R
R/fslexp.R
R/fsl_acos.R
R/fslvolume.R
R/fslcpgeom.R
R/probtrackx.R
R/fsl_recip.R
R/fsl_sqrt.R
R/topup.R
R/fslbin.help.R
R/fslsin.help.R
R/fsl_dice.R
R/fsl_merge.R
R/fslrobustfov.R
R/fslbin.R
R/fsledge.R
R/applywarp.R
R/fslsub2.help.R
R/mcflirt.R
R/fsledge.help.R
R/fslchfiletype.R
R/fslmask.help.R
R/fsl_thresh.R
R/fsl_erode.R
R/fsl_anat.R
R/fslatan.R
R/fslrandn.help.R
R/fslacos.R
R/susan.R
R/fsl_maths.R
R/fsl_rand.R
R/fslnan.R
R/fslsqrt.R
R/fsl_index.R
R/fnirt.R
R/fslindex.R
R/mni_fname.R
R/fslmean.R
R/fslasin.help.R
R/fsl_randn.R
R/fsl_bin.R
R/fsl_bet.R
R/fsl_rem.R
R/fslsub.R
R/fsl_cos.R
R/fsldiv.R
R/sizeof_hdr.R
R/fsldiv.help.R
R/fsl_add.R
R/bitpix.R
R/fslrand.help.R
R/fsl_atan.R
R/aux_file.R
R/fslrem.help.R
R/magic.R
R/datatype.R
R/fslfill2.R
R/fsl_nanm.R
R/fslhd.R
R/fsladd.R
R/fslentropy.R
R/import_methods.R
R/fslatan.help.R
R/fslrandn.R
R/fslcos.help.R
R/fsl_sqr.R
R/fslrand.R
R/fslsmooth_in_mask.R
R/fslsmooth.help.R
R/fsltan.R
R/intent_p3.R
R/cal_min.R
R/fslthresh.help.R
R/fsl_swapdim.R
R/fslsd.R
R/fsl_log.R
R/slice_duration.R
R/intent_p1.R
R/dim_.R
R/sform_code.R
R/fslerode.help.R
R/avscale.R
R/fsl_mask.R
R/fslabs.R
R/fsl_data_dir.R
R/fslsub.help.R
R/slice_end.R
R/rpi_orient.R
R/fsl_bin_tab.R
R/fslmul.help.R
R/fsl_nan.R
R/fsllog.R
R/xfibres.R
R/fslrem.R
R/slice_start.R
R/readrpi.R
R/intent_name.R
R/eddy_correct.R
R/fsl_sub.R
R/fslsum.R
R/data_type.R
R/fsltan.help.R
R/fslsplit.R
R/fsl_binv.R
R/fslsqrt.help.R
R/fsl_slicetimer.R
R/fslbinv.help.R
R/fslsqr.R
R/fsl_exp.R
R/fsl_asin.R
R/fslacos.help.R
R/fslsqr.help.R
R/fslgetorient.R
R/fsl_tan.R
R/scl_slope.R
R/vox_offset.R
R/fslsin.R
R/fslmul.R
R/qform.R
R/slice_code.R
R/run_first_all.R
R/fsl_version.R
R/fsl_sub2.R
R/fslcos.R
R/sform.R
R/fslindex.help.R
R/fslexp.help.R
R/fsl_mul.R
R/fslbinv.R
R/toffset.R
R/pixdim.R
R/fsl_fill.R
R/fslrecip.help.R
R/mid_sagittal_align.R
R/flirt_apply.R
R/fslfill.help.R
R/fslnanm.help.R
R/fsllog.help.R
R/fslasin.R
R/fslroi.R
R/fast.R
R/dtifit.R
R/fsl_smooth.R
R/fsladd.help.R
R/intent_p2.R
R/fslabs.help.R
R/cal_max.R
R/fsl_abs.R
R/fsl_div.R
R/download_fsl.R
R/qform_code.R
R/descrip.R
R/fsldilate.R
R/fslnan.help.R
vignettes
vignettes/dti_data.Rmd
vignettes/fslr.Rmd
MD5
build
build/vignette.rds
DESCRIPTION
man
man/fslstats.help.Rd
man/get.imgext.Rd
man/vox_offset-methods.Rd
man/fsl_anat.Rd
man/melodic.Rd
man/fslbet.Rd
man/fslrandn.help.Rd
man/dtifit.Rd
man/melodic.help.Rd
man/fslrem.Rd
man/fslrecip.help.Rd
man/fslerode.Rd
man/intent_code-methods.Rd
man/fslrobustfov.help.Rd
man/fsl_data_dir.Rd
man/fslfill.help.Rd
man/fslroi.Rd
man/fslatan.Rd
man/fsl_avscale.Rd
man/cal_min-methods.Rd
man/rpi_orient.Rd
man/fsl_applywarp.help.Rd
man/fslreorient2std.help.Rd
man/aux_file-methods.Rd
man/have.fsl.Rd
man/sform_code-methods.Rd
man/fslsin.Rd
man/fslsd.Rd
man/fslbet.help.Rd
man/fslorient.help.Rd
man/fslcpgeom.help.Rd
man/fslbin.help.Rd
man/get.fsl.Rd
man/fslindex.help.Rd
man/fsldilate.Rd
man/dim_-methods.Rd
man/download_fsl.Rd
man/fslmaths.Rd
man/susan.Rd
man/fsladd.Rd
man/fslcos.Rd
man/fslrecip.Rd
man/fsl_anat.help.Rd
man/fslasin.help.Rd
man/fslacos.help.Rd
man/fslerode.help.Rd
man/run_first_all.help.Rd
man/fsl_dice.Rd
man/fslsub2.help.Rd
man/fsllog.Rd
man/fslsmooth.help.Rd
man/fslrand.help.Rd
man/reverse_rpi_orient.Rd
man/fslhd.help.Rd
man/eddy_correct.Rd
man/fslabs.Rd
man/fslsplit.Rd
man/mni_img.Rd
man/fslnanm.Rd
man/fslsmooth.Rd
man/fslsplit.help.Rd
man/fslmask.Rd
man/fslcos.help.Rd
man/fslexp.help.Rd
man/run_first_all.Rd
man/fslsqrt.help.Rd
man/fslsin.help.Rd
man/fslbinv.help.Rd
man/readrpi.Rd
man/descrip-methods.Rd
man/getForms.Rd
man/flirt_apply.Rd
man/fslbin.Rd
man/fslsub2.Rd
man/fslorienter.Rd
man/fslexp.Rd
man/sizeof_hdr-methods.Rd
man/fsllog.help.Rd
man/mcflirt.help.Rd
man/fsladd.help.Rd
man/fslatan.help.Rd
man/mni_fname.Rd
man/flirt.Rd
man/fslsum.Rd
man/datatype-methods.Rd
man/scl_slope-methods.Rd
man/fsl_bin_tab.Rd
man/qform_code-methods.Rd
man/fslstats.Rd
man/fslslicetimer.Rd
man/fslhelp.Rd
man/slice_code-methods.Rd
man/fslbinv.Rd
man/fslswapdim.help.Rd
man/slice_end-methods.Rd
man/fslcog.Rd
man/fast.Rd
man/fnirt.help.Rd
man/fsltan.Rd
man/fslrandn.Rd
man/fslview.Rd
man/intent_name-methods.Rd
man/fslrand.Rd
man/fsl_biascorrect.Rd
man/topup.Rd
man/fslhd.parse.Rd
man/fslindex.Rd
man/fslval.help.Rd
man/fsl_version.Rd
man/fslsqr.help.Rd
man/orientation-methods.Rd
man/fslnan.Rd
man/fslrem.help.Rd
man/fslmaths.help.Rd
man/get.fsloutput.Rd
man/fsldiv.help.Rd
man/fslcpgeom.Rd
man/fsl_applywarp.Rd
man/fslabs.help.Rd
man/fsldiv.Rd
man/fslmerge.Rd
man/data_type-methods.Rd
man/checkout.Rd
man/fslthresh.help.Rd
man/fast.help.Rd
man/fslrobustfov.Rd
man/fslvolume.Rd
man/fnirt.Rd
man/magic-methods.Rd
man/fslacos.Rd
man/fnirt_with_affine.Rd
man/fslsmooth_in_mask.Rd
man/cal_max-methods.Rd
man/fslhd.Rd
man/fslmin_max.Rd
man/fslview.help.Rd
man/fsl_std_dir.Rd
man/fslfill.Rd
man/fslcmd.Rd
man/fslnanm.help.Rd
man/fslnan.help.Rd
man/fslsqr.Rd
man/flirt.help.Rd
man/fslmerge.help.Rd
man/fsltan.help.Rd
man/fslentropy.Rd
man/fslfill2.Rd
man/fslmul.help.Rd
man/fnirt_with_affine_apply.Rd
man/fslval.Rd
man/fslsqrt.Rd
man/probtrackx.Rd
man/fsledge.help.Rd
man/fslmul.Rd
man/fslorient_wrap.Rd
man/fsldir.Rd
man/fslsub.Rd
man/fslchfiletype.Rd
man/fslsub.help.Rd
man/fslmask.help.Rd
man/slice_duration-methods.Rd
man/fsledge.Rd
man/bitpix-methods.Rd
man/intent_p2-methods.Rd
man/scl_inter-methods.Rd
man/fsl_atlas_dir.Rd
man/fslchfiletype.help.Rd
man/toffset-methods.Rd
man/pixdim-methods.Rd
man/parse_avscale.Rd
man/fslreorient2std.Rd
man/intent_p3-methods.Rd
man/fslswapdim.Rd
man/xfibres.Rd
man/susan.help.Rd
man/check_file.Rd
man/fslmean.Rd
man/fslvol.Rd
man/fslasin.Rd
man/mid_sagittal_align.Rd
man/intent_p1-methods.Rd
man/fslorient.Rd
man/fslthresh.Rd
man/mcflirt.Rd
man/slice_start-methods.Rd
man/fslrange.Rd
fslr documentation built on May 19, 2017, 8:16 a.m.