fnirt_with_affine | R Documentation |
This function calls fnirt
to register infile to reffile
and either saves the image or returns an object of class nifti, but does
the affine registration first
fnirt_with_affine( infile, reffile, flirt.omat = NULL, flirt.outfile = NULL, outfile = NULL, retimg = TRUE, reorient = FALSE, intern = FALSE, flirt.opts = "", opts = "", verbose = TRUE, ... )
infile |
(character) input filename |
reffile |
(character) reference image to be registered to |
flirt.omat |
(character) Filename of output affine matrix |
flirt.outfile |
(character) Filename of output affine-registered image |
outfile |
(character) output filename |
retimg |
(logical) return image of class nifti |
reorient |
(logical) If retimg, should file be reoriented when read in?
Passed to |
intern |
(logical) pass to |
flirt.opts |
(character) additional options to FLIRT |
opts |
(character) additional options to FNIRT |
verbose |
(logical) print out command before running |
... |
additional arguments passed to |
character or logical depending on intern
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