fsl_biascorrect: FSL Bias Correct

In fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

FSL Bias Correct

Description

This function wraps a call to fast that performs bias correction

Usage

fsl_biascorrect(
  file,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  remove.seg = TRUE,
  ...
)

Arguments

file	(character) image to be manipulated
outfile	(character) resultant image name (optional)
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern	(logical) to be passed to system
opts	(character) operations to be passed to fast
verbose	(logical) print out command before running
remove.seg	(logical) Should segmentation from FAST be removed?
...	additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.

fslr documentation built on May 29, 2024, 2:31 a.m.