fsl_anat: FSL Anatomical Processing Script

In fslr: Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')

FSL Anatomical Processing Script

Description

This function calls fsl_anat from FSL

Usage

fsl_anat(
  file,
  modality = c("T1", "T2", "PD"),
  outdir = NULL,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

file	(character) image to be manipulated, should be full path
modality	(character) Modality of Image to be run
outdir	(character) output directory, if none specified, will default to dirname(file)
intern	(logical) to be passed to system
opts	(character) operations to be passed to fsl_anat
verbose	(logical) print out command before running
...	options passed to checkimg

Value

Result from system command, depends if intern is TRUE or FALSE.

fslr documentation built on Sept. 10, 2025, 1:06 a.m.