applytopup: applytopup - calling FSL applytopup

Description Usage Arguments

View source: R/applytopup.R

Description

A tool for applying and correcting estimated susceptibility induced distortions

Usage

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applytopup(infile, datain, index, topup_files, out = NULL,
  method = c("lsr", "jac"), interp = c("spline", "trilinear"),
  verbose = TRUE)

apply_topup(...)

fsl_applytopup(...)

Arguments

infile

list of names of input image (to be corrected)

datain

name of text file with PE directions/times

index

list of indicies into –datain of the input image (to be corrected)

topup_files

name of field/movements (from topup)

out

basename for output (warped) image

method

Use jacobian modulation (jac) or least-squares resampling (lsr), default=lsr.

interp

Image interpolation model, trilinear or spline. Default spline

verbose

Print diagnostic information while running

...

arguments passed to topup if using fsl_topup


fslr documentation built on Aug. 6, 2019, 1:02 a.m.