boxMANA: Boxplot of resampled results

In fullfact: Full Factorial Breeding Analysis

Description

A simple boxplot function for bootstrap and jackknife resampled results of additive genetic, non-additive genetic, and maternal variance components.

Usage

boxMANA(comp, type = "perc", ymax = NULL, ymin = NULL, yunit = NULL, leg = "topright",
cex_ylab = 1, cex_yaxis = 1, cex_names = 1)

Arguments

comp	Data frame of bootstrap or jackknife resampling results.
type	Default is "perc" for percentage values of variance components. Other option is "raw" for raw values of variance components.
ymax	Maximum value of the y-axis.
ymin	Minimum value of the y-axis.
yunit	Unit increment of the y-axis.
leg	Position of the simple legend.
cex_ylab	Magnification of the y-axis label.
cex_yaxis	Magnification of the y-axis units.
cex_names	Optional magnification of trait labels.

Details

Plots an R boxplot. Uses an object produced by any of the bootstrap resampling functions, i.e. resampLmer, resampLmer2, resampLmer3, resampGlmer, resampGlmer2, and resampGlmer3. Or any of the jackknife resampling functions, i.e. JackLmer, JackLmer2, JackLmer3, JackGlmer, JackGlmer2, and JackGlmer3. Produces a simple legend.

Examples

##Import bootstrap resampled data model results
data(chinook_bootL) #Chinook salmon length
boxMANA(comp=chinook_bootL) #Default plot
boxMANA(comp=chinook_bootL,yunit=20,ymax=100,cex_ylab=1.3,leg="topleft")

##Group length and survival together in the same plot
data(chinook_bootS) #Chinook salmon survival
chinook_bootL$trait<- "length"; chinook_bootS$trait<- "survival"
comb_boot<- rbind(chinook_bootL[,-2],chinook_bootS) #remove 'tray'
comb_boot$trait<- as.factor(comb_boot$trait)
#
boxMANA(comp=comb_boot) #Default plot
boxMANA(comp=comb_boot,yunit=20,ymax=100,cex_ylab=1.3)

fullfact documentation built on March 14, 2021, 5:08 p.m.