chinook_length: Chinook salmon length, raw data

In fullfact: Full Factorial Breeding Analysis

Description

Raw Chinook salmon fork length (mm) at hatch for offspring produced using an 11 x 11 full factorial breeding design.

Usage

data("chinook_length")

Format

A data frame with 1210 observations on the following 8 variables.

family,

a factor with levels: f1 f10 f100 f101 f102 f103 f104 f105 f106 f107 f108 f109 f11 f110 f111 f112 f113 f114 f115 f116 f117 f118 f119 f12 f120 f121 f13 f14 f15 f16 f17 f18 f19 f2 f20 f21 f22 f23 f24 f25 f26 f27 f28 f29 f3 f30 f31 f32 f33 f34 f35 f36 f37 f38 f39 f4 f40 f41 f42 f43 f44 f45 f46 f47 f48 f49 f5 f50 f51 f52 f53 f54 f55 f56 f57 f58 f59 f6 f60 f61 f62 f63 f64 f65 f66 f67 f68 f69 f7 f70 f71 f72 f73 f74 f75 f76 f77 f78 f79 f8 f80 f81 f82 f83 f84 f85 f86 f87 f88 f89 f9 f90 f91 f92 f93 f94 f95 f96 f97 f98 f99

repli,

a factor with levels: r1 r2

dam,

a factor with levels: d1 d10 d11 d2 d3 d4 d5 d6 d7 d8 d9

sire,

a factor with levels: s1 s10 s11 s2 s3 s4 s5 s6 s7 s8 s9

tray,

a factor with levels: t1 t10 t11 t12 t13 t14 t15 t16 t2 t3 t4 t5 t6 t7 t8 t9

cell,

a factor with levels: 1A 1B 1C 1D 2A 2B 2C 2D 3A 3B 3C 3D 4A 4B 4C 4D

length,

a numeric vector.

egg_size,

a numeric vector.

Details

Also includes family identity, family replicate, incubator position (tray and cell), and average female egg size (mm) information.

Source

http://link.springer.com.proxy1.lib.uwo.ca/article/10.1007

References

Pitcher TE, Neff BD. 2007. Genetic quality and offspring performance in Chinook salmon: implications for supportive breeding. Conservation Genetics 8(3):607-616. DOI: 10.1007/s10592-006-9204-z

Examples

data(chinook_length)
## Standard additive genetic, non-additive genetic, and maternal variance analysis
length_mod1<- observLmer(observ=chinook_length,dam="dam",sire="sire",response="length")
length_mod1

Example output

[1] "2018-09-21 07:13:56 UTC"
Time difference of 1.889459 secs
$random
    effect     variance      percent     d.AIC      d.BIC       Chi.sq
1 dam:sire 1.719506e-01 1.730760e+01 111.90386 106.805481 1.139039e+02
2     sire 3.165478e-13 3.186195e-11  -2.00000  -7.098376 1.364242e-12
3      dam 1.900485e-01 1.912924e+01  41.61831  36.519932 4.361831e+01
       p.value
1 1.367824e-26
2 9.999991e-01
3 3.990881e-11

$other
  component  variance   percent
1  Residual 0.6314986  63.56316
2     Total 0.9934978 100.00000

$calculation
  component     variance      percent
1  additive 1.266191e-12 1.274478e-10
2    nonadd 6.878026e-01 6.923041e+01
3  maternal 1.900485e-01 1.912924e+01

fullfact documentation built on March 14, 2021, 5:08 p.m.