sort_components: Sort assembly centroids by decreasing or increasing mean...

Description Usage Arguments Details Value

View source: R/plot_fclust.R

Description

Plot

Usage

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sort_components(fobs, mOccur, cols,
                pvalue  = fpvalue(),
                opt.dec = TRUE  )

Arguments

fobs

numeric vector. The vector contains observed assemblage performances.

mOccur

a matrix of occurrence of components within the assemblages. dim(mOccur)[1] = length(fobs). dim(mOccur)[2] equals to the total number of components.

cols

an integer vector of length(fobs). The vector contains a colour label for each assemblages.

pvalue

a probability, used as threshold in the variance analysis. Then pvalue must be higher than 0 and lower than 1. Groups significantly different (at a p-value < pvalue) are then indicated by differents letters on the right of boxplots.

opt.dec

a logical. If opt.dec = TRUE, assembly motifs are sorted by decreasing mean performances. If opt.dec = FALSE, assembly motifs are sorted by increasing mean performances.

Details

None.

Value

Return a table containing statistical properties of assembly centroids, sorted by increasing or decreasing mean performances.


functClust documentation built on Dec. 2, 2020, 5:06 p.m.