sort_motifs: Sort assembly motifs

Description Usage Arguments Details Value

View source: R/plot_fclust.R

Description

Sort assembly motifs, by decreasing or increasing mean performances

Usage

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sort_motifs(fobs, assMotif, assNames,
            pvalue  = fpvalue(),
            opt.dec = TRUE   )

Arguments

fobs

numeric vector. The vector contains assemblage performances.

assMotif

an integer vector of length(fobs). The vector contains the labels of each assemblages. The labels are used to sorted the assemblages that share a same assembly motif.

assNames

a vector of strings of length(fobs). The vector contains the names of each assemblage.

pvalue

a probability, used as threshold in the variance analysis. Then pvalue must be higher than 0 and lower than 1. Groups significantly different (at a p-value < pvalue) are then indicated by differents letters on the right of boxplots.

opt.dec

a logical. If opt.dec = TRUE, assembly motifs are sorted by decreasing mean performances. If opt.dec = FALSE, assembly motifs are sorted by increasing mean performances.

Details

None.

Value

Return a table containing statistical properties of assembly motifs, sorted by increasing or decreasing mean performances.


functClust documentation built on Dec. 2, 2020, 5:06 p.m.