gapmap: Functions for Drawing Gapped Cluster Heatmap with ggplot2

The gap encodes the distance between clusters and improves interpretation of cluster heatmaps. The gaps can be of the same distance based on a height threshold to cut the dendrogram. Another option is to vary the size of gaps based on the distance between clusters.

AuthorRyo Sakai
Date of publication2016-12-05 18:28:47
MaintainerRyo Sakai <ryo@vda-lab.be>
LicenseGPL-2 | GPL-3
Version0.0.4
https://bitbucket.org/vda-lab/gapmap

View on CRAN

Files in this package

gapmap
gapmap/inst
gapmap/inst/doc
gapmap/inst/doc/tcga_example.R
gapmap/inst/doc/simple_example.html
gapmap/inst/doc/tcga_example.Rmd
gapmap/inst/doc/tcga_example.html
gapmap/inst/doc/simple_example.R
gapmap/inst/doc/simple_example.Rmd
gapmap/NAMESPACE
gapmap/data
gapmap/data/sample_tcga.rda
gapmap/R
gapmap/R/gap_dendrogram.R gapmap/R/is.gapdata.R gapmap/R/assign_positions.R gapmap/R/map.exp.R gapmap/R/assign_branch_positions.R gapmap/R/as.gapdata.R gapmap/R/get_most_right_leaf.R gapmap/R/map.R gapmap/R/count_gap.R gapmap/R/gap_heatmap.R gapmap/R/get_most_left_leaf.R gapmap/R/sum_distance.R gapmap/R/extract_list.R gapmap/R/gap_data.R gapmap/R/gap_label.R gapmap/R/gapmap-package.R gapmap/R/calculate_gap.R gapmap/R/gapmap.R gapmap/R/format_number.R gapmap/R/get_segment_df.R gapmap/R/set_most_right_leaf.R
gapmap/vignettes
gapmap/vignettes/tcga_example.Rmd
gapmap/vignettes/simple_example.Rmd
gapmap/MD5
gapmap/build
gapmap/build/vignette.rds
gapmap/DESCRIPTION
gapmap/man
gapmap/man/assign_branch_positions.Rd gapmap/man/extract_list.Rd gapmap/man/set_most_right_leaf.Rd gapmap/man/assign_positions.Rd gapmap/man/map.Rd gapmap/man/get_most_left_leaf.Rd gapmap/man/gapmap-package.Rd gapmap/man/format_number.Rd gapmap/man/sample_tcga.Rd gapmap/man/get_most_right_leaf.Rd gapmap/man/is.gapdata.Rd gapmap/man/get_segment_df.Rd gapmap/man/gap_heatmap.Rd gapmap/man/gap_dendrogram.Rd gapmap/man/sum_distance.Rd gapmap/man/gap_data.Rd gapmap/man/as.gapdata.Rd gapmap/man/gap_label.Rd gapmap/man/calculate_gap.Rd gapmap/man/count_gap.Rd gapmap/man/map.exp.Rd gapmap/man/gapmap.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

All documentation is copyright its authors; we didn't write any of that.