View source: R/calculate_gap.R
calculate_gap | R Documentation |
This function takes a dendrogram class object and other attributes to calcuate the size of gaps between leaves. The gap is stored in a leaf to its left. The function is called recursively.
calculate_gap(
d,
sum,
gap_total,
mode = c("quantitative", "threshold"),
mapping = c("exponential", "linear"),
scale = 0.2,
max_height = 0,
threshold = 2,
gap_size = 0,
verbose = FALSE,
...
)
d |
dendrogram class object |
sum |
the sum of distance |
gap_total |
the total width allocated for gaps |
mode |
gap mode, either "threshold" or "quantitative" |
mapping |
in case of quantitative mode, either "linear" or "exponential" mapping |
scale |
the sclae log base for the exponential mapping |
max_height |
the highest distance value, which is the value of the first dendrogram branch |
threshold |
the threshold value for threshold mode |
gap_size |
the size of gap for threshold mode |
verbose |
logical for whether in verbose mode or not |
... |
ignored |
the annotated dendrogram class object
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