Files in gaston
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
MD5
NEWS.md
NAMESPACE
DESCRIPTION
TODO
R/bm_ld.r
R/bm_genomic_sex.r
R/ld_clump.r
R/lmm_diago.r
R/ld_thin.r
R/lmm.profile.restricted.likelihood.r
R/lmm_diago_full.r
R/logp.thinning.r
R/bm_files.r
R/bm_subsetting.r
R/rbind.r
R/ld_plot.r
R/bm_interface.r
R/snp_rm_duplicates.r
R/set.dist.r
R/random_pm.r
R/cbind.r
R/lmm_aireml.r
R/gwas.r
R/score.r
R/bm.r
R/bm_merge.r
R/bm_hwe.r
R/zzz.r
R/lik_contour.r
R/bm_vcf.r
R/manhattan.thinning.r
R/snp_duplicated.r
R/qqplot.pvalues.r
R/bm_product.r
R/lmm_simu.r
R/lmm.restricted.likelihood.r
R/all_eq.r
R/bm_stats.r
R/bm_select.r
R/manhattan.r
R/logistic_mm_aireml.r
R/bm_grm.r
R/bm_as_bm.r
R/snp_match.r
src/m4_bind_snps.cpp
src/m4_transpose.cpp
src/matrix-varia.cpp
src/m4_prod_p.cpp
src/Makevars
src/gwas_lmm_diago_lrt.cpp
src/random_ortho.cpp
src/re_likelihood.cpp
src/davies.c
src/m4_prod_ms.cpp
src/snp_match.cpp
src/lmm_diago_fit.cpp
src/gwas_logit_wald.cpp
src/gwas_lmm_score.cpp
src/m4_bed.cpp
src/gwas_lmm_diago_wald.cpp
src/lmm_diago_full_likelihood.cpp
src/m4_conversion.cpp
src/m4_read_vcf_2.cpp
src/m4_ldthin_random.cpp
src/allele_recoding.cpp
src/m4_ldthin_left.cpp
src/duplicated_remove.cpp
src/ld_clump.cpp
src/manhattan_thinning.cpp
src/export-aireml-logit-1k.cpp
src/m4_stats.cpp
src/gwas_logitmm_wald.cpp
src/m4_ld.cpp
src/m4_extractsnp.cpp
src/m4_ldp.cpp
src/export-aireml-1k.cpp
src/alleles_duplicated.cpp
src/pre_likelihood.cpp
src/m4_prod2_ms.cpp
src/m4_kinship_p.cpp
src/m4_extractind.cpp
src/matrix4.cpp
src/gaston_init.c
src/hwe_chi.cpp
src/loubar.cpp
src/gwas_lm_quanti.cpp
src/export-aireml-nk.cpp
src/logp_thinning.cpp
src/isnullptr.cpp
src/export-aireml-logit-nk.cpp
src/lmm_diago_min_max_h2.cpp
src/hwe.cpp
src/m4_bind_inds.cpp
src/m4_prod2_p.cpp
src/m4_ldthin_right.cpp
src/m4_recode.cpp
src/lmm_diago_likelihood.cpp
src/m4_kinship.cpp
src/snp_duplicated.cpp
src/export-logit.cpp
src/m4_exports.cpp
src/m4_dims.cpp
inst/include/gaston.h
inst/include/gaston/lmm_diago_min_max_h2.h
inst/include/gaston/ai-reml-1k-covar.h
inst/include/gaston/gzstream.h
inst/include/gaston/diago2_full_nocovar.h
inst/include/gaston/any_nan.h
inst/include/gaston/loubar.h
inst/include/gaston/any.h
inst/include/gaston/matrix4.h
inst/include/gaston/diago2_full.h
inst/include/gaston/ai-reml-1k.h
inst/include/gaston/diago2_nocovar.h
inst/include/gaston/flip_strand.h
inst/include/gaston/ai-reml-logit-nk.h
inst/include/gaston/string_equal.h
inst/include/gaston/ai-reml-nk.h
inst/include/gaston/Parallel.h
inst/include/gaston/diago2.h
inst/include/gaston/optimize_2.h
inst/include/gaston/m4_kinship_type.h
inst/include/gaston/snp_hash.h
inst/include/gaston/ai-reml-nk-covar.h
inst/include/gaston/matrix-varia.h
inst/include/gaston/ai-reml-logit-1k-covar.h
inst/include/gaston/logit_model.h
inst/include/gaston/ai-reml-logit-nk-covar.h
inst/include/gaston/ai-reml-logit-1k.h
inst/include/gaston/m4_ld.h
inst/doc/gaston-faq.pdf
inst/doc/gaston-faq.Rnw
inst/doc/gaston.Rnw
inst/doc/gaston.pdf
inst/doc/gaston.R
inst/doc/gaston-faq.R
inst/extdata/LCT.fam
inst/extdata/LCT.bed
inst/extdata/LCT.vcf.gz
inst/extdata/chr2.rds
inst/extdata/LCT.rds
inst/extdata/LCT.bim
inst/extdata/chr2.bed
inst/extdata/LCT.vcf.gz.tbi
build/vignette.rds
vignettes/gaston-faq.Rnw
vignettes/gaston.Rnw
data/datalist
data/TTN.rda
data/AGT.rda
data/dupli.rda
data/LCT.rda
man/TTN.Rd
man/DM.Rd
man/lik.contour.Rd
man/set.genomic.sex.Rd
man/manhattan.Rd
man/gaston-package.Rd
man/SNP.match.Rd
man/logistic.mm.aireml.Rd
man/reshape.GRM.Rd
man/as.bed.matrix.Rd
man/LD.Rd
man/AGT.Rd
man/score.variance.Rd
man/qqplot.pvalues.Rd
man/random.pm.Rd
man/read.vcf.Rd
man/read.bed.matrix.Rd
man/lmm.diago.Rd
man/Tests.Rd
man/score.fixed.Rd
man/LD.plot.Rd
man/set.dist.Rd
man/select.inds.Rd
man/set.stats.Rd
man/LD.clump.Rd
man/LD.thin.Rd
man/lmm.diago.likelihood.Rd
man/set.hwe.Rd
man/SNP.rm.duplicates.Rd
man/GRM.Rd
man/lmm.restricted.likelihood.Rd
man/bed.matrix-class.Rd
man/lmm.simu.Rd
man/SNP.duplicated.Rd
man/lmm.aireml.Rd
man/select.snps.Rd
man/association.test.Rd
man/dupli.Rd
man/bed.loadings.Rd
man/LCT.Rd
man/write.bed.matrix.Rd
man/is.autosome.Rd
