API for geneHapR
Gene Haplotype Statistics, Phenotype Association and Visualization
| Global functions | |
|---|---|
| AccINFO | Man page |
| DataSet | Man page |
| LDheatmap | Man page |
| LDheatmapLegend.add | Source code |
| LDheatmapMapNew.add | Source code |
| POS2GRanges | Source code |
| SetATGas0 | Man page |
| addINFO | Man page Source code |
| addPromoter | Man page Source code |
| as.haplotype | Man page Source code |
| ashaplotype | Man page |
| assign_hapID | Source code |
| build_app_geneHapR | Man page |
| china | Man page |
| chisq.test.ps | Source code |
| circle | Source code |
| compareAllSites | Man page Source code |
| condon2aa | Source code |
| diamond | Source code |
| displayVarOnGeneModel | Man page Source code |
| drawAlternativeLinks | Source code |
| drawSymbolsHaploNet | Source code |
| filterLargeP.link | Man page Source code |
| filterLargeP.link_One | Source code |
| filterLargeVCF | Man page Source code |
| filterLargeVCF_Multi | Source code |
| filterLargeVCF_One | Source code |
| filterLargep.link | Man page |
| filter_hap | Man page Source code |
| filter_hmp | Man page Source code |
| filter_plink.pedmap | Man page Source code |
| filter_table | Man page Source code |
| filter_vcf | Man page Source code |
| geneHapR | Man page |
| geneHapR-package | Man page |
| genome2CDS | Source code |
| genomePos2CDS | Source code |
| getAutoAdj | Source code |
| getGenePOS | Man page Source code |
| getGeneRanges | Man page Source code |
| getHapGroup | Man page Source code |
| getStringDist | Source code |
| get_hapNet | Man page Source code |
| gff | Man page |
| gff2bed6 | Source code |
| gffSetATGas0 | Man page Source code |
| gt.geno | Man page |
| hap2hmp | Man page Source code |
| hap2string | Source code |
| hapDistribution | Man page Source code |
| hapResult | Man page |
| hapSetATGas0 | Man page Source code |
| hapSnpEff | Source code |
| hapVsPheno | Man page Source code |
| hapVsPhenoPerSite | Man page Source code |
| hapVsPhenos | Man page Source code |
| hap_summary | Man page Source code |
| haploNetPloter | Source code |
| hmp2hap | Man page Source code |
| import_AccINFO | Man page Source code |
| import_MultipleAlignment | Man page Source code |
| import_bed | Man page Source code |
| import_gff | Man page Source code |
| import_hap | Man page Source code |
| import_plink.pedmap | Man page Source code |
| import_seqs | Man page Source code |
| import_vcf | Man page Source code |
| is.biallelic.allele | Source code |
| is.indel.allele | Source code |
| is.multiallelic.allele | Source code |
| is.p | Source code |
| labelSegmentsHaploNet | Source code |
| makeImageRect | Source code |
| makeImageText | Source code |
| merge_Vcf | Source code |
| mutationRug | Source code |
| network | Man page |
| nucl2aa | Source code |
| pheno | Man page |
| plink.pedmap2hap | Man page Source code |
| plink.pedmap2hapdata | Source code |
| plotEFF | Man page Source code |
| plotHapNet | Man page Source code |
| plotHapTable | Man page Source code |
| plotHapTable2 | Man page Source code |
| plotHapi | Source code |
| plot_LDheatmap | Man page |
| postDrawDetails.ldheatmap | Source code |
| postDrawDetails.symbols | Source code |
| preDrawDetails.ldheatmap | Source code |
| preDrawDetails.symbols | Source code |
| print.hapNet | Source code |
| print.hapResult | Source code |
| print.hapSummary | Source code |
| pscale | Source code |
| removeOutlier | Source code |
| remove_redundancy_col | Source code |
| rotateSquares | Source code |
| seq2hap_data | Source code |
| seqs | Man page |
| seqs2hap | Man page Source code |
| setATGas0 | Source code |
| setWindow4haploNet | Source code |
| siteEFF | Man page Source code |
| sites | Man page Source code |
| sites_compar | Man page |
| square | Source code |
| squarePegas | Source code |
| startGUI.geneHapR | Man page |
| t_test_for_ps | Source code |
| table2hap | Man page Source code |
| table2hapdata | Source code |
| trimSeqs | Man page Source code |
| update_allS | Source code |
| vcf | Man page |
| vcf2hap | Man page Source code |
| vcf2hap_data | Source code |
| where_ | Source code |
| wilcox_test_for_ps | Source code |
| write.hap | Man page Source code |
