gimap_stats: Do tests -an internal function used by calc_gi() function

In gimap: Calculate Genetic Interactions for Paired CRISPR Targets

Do tests –an internal function used by calc_gi() function

Description

Create results table that has t test p values

Usage

gimap_stats(gi_calc_double, gi_calc_single, use_ntc = TRUE, replicate = NULL)

Arguments

gi_calc_double	a data.frame with adjusted double gi scores
gi_calc_single	a data.frame with adjusted single gi scores
use_ntc	Logical. If TRUE, uses a two-sample t-test comparing double target GI scores against single target GI scores. If FALSE, uses a one-sample t-test against mu=0 since single target GI scores have zero variance when negative controls are not used.
replicate	a name of a replicate to filter out from gi_calc_adj Optional

gimap documentation built on July 10, 2026, 1:06 a.m.