qc_variance_hist: Create a histogram for the variance within replicates for...

In gimap: Calculate Genetic Interactions for Paired CRISPR Targets

Create a histogram for the variance within replicates for each pgRNA

Description

This function uses pivot_longer to rearrange the data for plotting, finds the variance for each pgRNA construct (using row number as a proxy) and then plots a histogram of these variances

Usage

qc_variance_hist(
  gimap_dataset,
  filter_replicates_target_col = NULL,
  wide_ar = 0.75
)

Arguments

gimap_dataset	The special gimap_dataset from the 'setup_data' function which contains the transformed data
filter_replicates_target_col	default is NULL; Which sample columns are replicates whose variation you'd like to analyze; If NULL, the last 3 sample columns are used
wide_ar	aspect ratio, default is 0.75

Value

a ggplot histogram

Examples

## Not run: 
gimap_dataset <- get_example_data("gimap")
qc_variance_hist(gimap_dataset)

## End(Not run)

gimap documentation built on June 8, 2025, 10:13 a.m.