plot_rank_scatter: Rank plot for target-level GI scores

In gimap: Calculate Genetic Interactions for Paired CRISPR Targets

Rank plot for target-level GI scores

Description

This plot is meant to be functionally equivalent to Fig 5a (for HeLa, equivalent of Fig 3c for PC9). Rank plot of target-level GI scores. Dashed horizontal lines are for GI scores of 0.25 and -0.5

Usage

plot_rank_scatter(gimap_dataset, reps_to_drop = "")

Arguments

gimap_dataset	A special dataset structure that is originally setup using 'setup_data()' and has had gi scores calculated with 'calc_gi()'.
reps_to_drop	Names of replicates that should be not plotted (Optional)

Value

A ggplot2 rankplot of the target level genetic interaction scores.

Examples

gimap_dataset <- get_example_data("gimap") %>%
  gimap_filter() %>%
  gimap_annotate(cell_line = "HELA") %>%
  gimap_normalize(
    timepoints = "day"
  ) %>%
  calc_gi()

# To plot results
plot_exp_v_obs_scatter(gimap_dataset)
plot_rank_scatter(gimap_dataset)
plot_volcano(gimap_dataset)

gimap documentation built on June 8, 2025, 10:13 a.m.