checkChain: Plot an MCMC run

In glmmBUGS: Generalised Linear Mixed Models with BUGS and JAGS

Description

Makes time series plots of the parameters (not the random effects) of an MCMC run.

Usage

checkChain(chain, parameters=NULL, oneFigure=TRUE)

Arguments

chain	The result from restoreParams, or the sims.array componento f a bugs call.
parameters	Vector of character strings giving names of parameters to plot. Default is all parameters with names starting with either "beta", "intercept", or "SD".
oneFigure	if TRUE, use par(mfrow=c(a,b)) to put all plots on the same device. Otherwise create a new device for each plot.

Value

Plots are produced, nothing is returned

Author(s)

Patrick Brown

See Also

restoreParams, summaryChain

Examples

thechain = list(beta = array(1, c(10, 3,4), 
dimnames = list(NULL, NULL, paste("beta[", 1:4, "]", sep=""))),
 intercept = matrix(1, 10, 3))

checkChain(thechain)

glmmBUGS documentation built on May 2, 2018, 1:03 a.m.