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tests/testthat/_snaps/add_difference.tbl_hierarchical.md
In gtsummary: Presentation-Ready Data Summary and Analytic Result Tables
add_difference.tbl_hierarchical() works
Code
as.data.frame(res)
Output
**Primary System Organ Class** \n **Dictionary-Derived Term** **Placebo** \nN = 86 **Xanomeline High Dose** \nN = 84 **Xanomeline Low Dose** \nN = 84 **Rate Difference**
1 GASTROINTESTINAL DISORDERS 17 (20%) 21 (25%) 15 (18%) 5.2%
2 ABDOMINAL DISCOMFORT 0 (0%) 1 (1.2%) 0 (0%) 1.2%
3 ABDOMINAL PAIN 1 (1.2%) 1 (1.2%) 3 (3.6%) 0.0%
4 CONSTIPATION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
5 DIARRHOEA 9 (10%) 4 (4.8%) 5 (6.0%) -5.7%
6 DYSPEPSIA 1 (1.2%) 1 (1.2%) 1 (1.2%) 0.0%
7 DYSPHAGIA 0 (0%) 0 (0%) 1 (1.2%) 0.0%
8 FLATULENCE 1 (1.2%) 0 (0%) 0 (0%) -1.2%
9 GASTROINTESTINAL HAEMORRHAGE 0 (0%) 1 (1.2%) 0 (0%) 1.2%
10 GASTROOESOPHAGEAL REFLUX DISEASE 1 (1.2%) 0 (0%) 0 (0%) -1.2%
11 GLOSSITIS 1 (1.2%) 0 (0%) 0 (0%) -1.2%
12 HIATUS HERNIA 1 (1.2%) 0 (0%) 0 (0%) -1.2%
13 NAUSEA 3 (3.5%) 6 (7.1%) 3 (3.6%) 3.7%
14 RECTAL HAEMORRHAGE 0 (0%) 0 (0%) 1 (1.2%) 0.0%
15 SALIVARY HYPERSECRETION 0 (0%) 4 (4.8%) 0 (0%) 4.8%
16 STOMACH DISCOMFORT 0 (0%) 1 (1.2%) 0 (0%) 1.2%
17 VOMITING 3 (3.5%) 7 (8.3%) 3 (3.6%) 4.8%
18 GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS 21 (24%) 40 (48%) 47 (56%) 23.2%
19 APPLICATION SITE BLEEDING 0 (0%) 0 (0%) 1 (1.2%) 0.0%
20 APPLICATION SITE DERMATITIS 5 (5.8%) 7 (8.3%) 9 (11%) 2.5%
21 APPLICATION SITE DESQUAMATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
22 APPLICATION SITE DISCHARGE 0 (0%) 1 (1.2%) 0 (0%) 1.2%
23 APPLICATION SITE DISCOLOURATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
24 APPLICATION SITE ERYTHEMA 3 (3.5%) 15 (18%) 12 (14%) 14.4%
25 APPLICATION SITE INDURATION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
26 APPLICATION SITE IRRITATION 3 (3.5%) 9 (11%) 9 (11%) 7.2%
27 APPLICATION SITE PAIN 0 (0%) 2 (2.4%) 0 (0%) 2.4%
28 APPLICATION SITE PERSPIRATION 0 (0%) 2 (2.4%) 0 (0%) 2.4%
29 APPLICATION SITE PRURITUS 6 (7.0%) 22 (26%) 22 (26%) 19.2%
30 APPLICATION SITE REACTION 1 (1.2%) 1 (1.2%) 0 (0%) 0.0%
31 APPLICATION SITE SWELLING 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
32 APPLICATION SITE URTICARIA 0 (0%) 1 (1.2%) 2 (2.4%) 1.2%
33 APPLICATION SITE VESICLES 1 (1.2%) 6 (7.1%) 4 (4.8%) 6.0%
34 APPLICATION SITE WARMTH 0 (0%) 0 (0%) 1 (1.2%) 0.0%
35 ASTHENIA 1 (1.2%) 1 (1.2%) 0 (0%) 0.0%
36 CHEST DISCOMFORT 0 (0%) 2 (2.4%) 0 (0%) 2.4%
37 CHEST PAIN 0 (0%) 2 (2.4%) 0 (0%) 2.4%
38 CHILLS 1 (1.2%) 1 (1.2%) 1 (1.2%) 0.0%
39 CYST 0 (0%) 0 (0%) 1 (1.2%) 0.0%
40 FATIGUE 1 (1.2%) 5 (6.0%) 5 (6.0%) 4.8%
41 FEELING ABNORMAL 0 (0%) 1 (1.2%) 0 (0%) 1.2%
42 FEELING COLD 0 (0%) 1 (1.2%) 0 (0%) 1.2%
43 INFLAMMATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
44 MALAISE 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
45 OEDEMA 0 (0%) 0 (0%) 2 (2.4%) 0.0%
46 OEDEMA PERIPHERAL 2 (2.3%) 2 (2.4%) 1 (1.2%) 0.1%
47 PAIN 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
48 PYREXIA 2 (2.3%) 1 (1.2%) 0 (0%) -1.1%
49 SECRETION DISCHARGE 0 (0%) 0 (0%) 1 (1.2%) 0.0%
50 SUDDEN DEATH 0 (0%) 0 (0%) 1 (1.2%) 0.0%
51 SWELLING 0 (0%) 0 (0%) 1 (1.2%) 0.0%
52 ULCER 0 (0%) 0 (0%) 1 (1.2%) 0.0%
53 SKIN AND SUBCUTANEOUS TISSUE DISORDERS 21 (24%) 42 (50%) 42 (50%) 25.6%
54 ACTINIC KERATOSIS 0 (0%) 1 (1.2%) 0 (0%) 1.2%
55 ALOPECIA 1 (1.2%) 0 (0%) 0 (0%) -1.2%
56 BLISTER 0 (0%) 1 (1.2%) 5 (6.0%) 1.2%
57 COLD SWEAT 1 (1.2%) 0 (0%) 0 (0%) -1.2%
58 DERMATITIS ATOPIC 1 (1.2%) 0 (0%) 0 (0%) -1.2%
59 DERMATITIS CONTACT 0 (0%) 0 (0%) 1 (1.2%) 0.0%
60 DRUG ERUPTION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
61 ERYTHEMA 9 (10%) 14 (17%) 15 (18%) 6.2%
62 HYPERHIDROSIS 2 (2.3%) 8 (9.5%) 4 (4.8%) 7.2%
63 PRURITUS 8 (9.3%) 26 (31%) 23 (27%) 21.7%
64 PRURITUS GENERALISED 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
65 RASH 5 (5.8%) 11 (13%) 13 (15%) 7.3%
66 RASH ERYTHEMATOUS 0 (0%) 0 (0%) 2 (2.4%) 0.0%
67 RASH MACULO-PAPULAR 0 (0%) 1 (1.2%) 0 (0%) 1.2%
68 RASH PAPULAR 0 (0%) 1 (1.2%) 0 (0%) 1.2%
69 RASH PRURITIC 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
70 SKIN EXFOLIATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
71 SKIN IRRITATION 3 (3.5%) 5 (6.0%) 6 (7.1%) 2.5%
72 SKIN ODOUR ABNORMAL 0 (0%) 1 (1.2%) 0 (0%) 1.2%
73 SKIN ULCER 1 (1.2%) 0 (0%) 0 (0%) -1.2%
74 URTICARIA 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
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add_difference.tbl_hierarchical() works
Code
as.data.frame(res)
Output
**Primary System Organ Class** \n **Dictionary-Derived Term** **Placebo** \nN = 86 **Xanomeline High Dose** \nN = 84 **Xanomeline Low Dose** \nN = 84 **Rate Difference**
1 GASTROINTESTINAL DISORDERS 17 (20%) 21 (25%) 15 (18%) 5.2%
2 ABDOMINAL DISCOMFORT 0 (0%) 1 (1.2%) 0 (0%) 1.2%
3 ABDOMINAL PAIN 1 (1.2%) 1 (1.2%) 3 (3.6%) 0.0%
4 CONSTIPATION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
5 DIARRHOEA 9 (10%) 4 (4.8%) 5 (6.0%) -5.7%
6 DYSPEPSIA 1 (1.2%) 1 (1.2%) 1 (1.2%) 0.0%
7 DYSPHAGIA 0 (0%) 0 (0%) 1 (1.2%) 0.0%
8 FLATULENCE 1 (1.2%) 0 (0%) 0 (0%) -1.2%
9 GASTROINTESTINAL HAEMORRHAGE 0 (0%) 1 (1.2%) 0 (0%) 1.2%
10 GASTROOESOPHAGEAL REFLUX DISEASE 1 (1.2%) 0 (0%) 0 (0%) -1.2%
11 GLOSSITIS 1 (1.2%) 0 (0%) 0 (0%) -1.2%
12 HIATUS HERNIA 1 (1.2%) 0 (0%) 0 (0%) -1.2%
13 NAUSEA 3 (3.5%) 6 (7.1%) 3 (3.6%) 3.7%
14 RECTAL HAEMORRHAGE 0 (0%) 0 (0%) 1 (1.2%) 0.0%
15 SALIVARY HYPERSECRETION 0 (0%) 4 (4.8%) 0 (0%) 4.8%
16 STOMACH DISCOMFORT 0 (0%) 1 (1.2%) 0 (0%) 1.2%
17 VOMITING 3 (3.5%) 7 (8.3%) 3 (3.6%) 4.8%
18 GENERAL DISORDERS AND ADMINISTRATION SITE CONDITIONS 21 (24%) 40 (48%) 47 (56%) 23.2%
19 APPLICATION SITE BLEEDING 0 (0%) 0 (0%) 1 (1.2%) 0.0%
20 APPLICATION SITE DERMATITIS 5 (5.8%) 7 (8.3%) 9 (11%) 2.5%
21 APPLICATION SITE DESQUAMATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
22 APPLICATION SITE DISCHARGE 0 (0%) 1 (1.2%) 0 (0%) 1.2%
23 APPLICATION SITE DISCOLOURATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
24 APPLICATION SITE ERYTHEMA 3 (3.5%) 15 (18%) 12 (14%) 14.4%
25 APPLICATION SITE INDURATION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
26 APPLICATION SITE IRRITATION 3 (3.5%) 9 (11%) 9 (11%) 7.2%
27 APPLICATION SITE PAIN 0 (0%) 2 (2.4%) 0 (0%) 2.4%
28 APPLICATION SITE PERSPIRATION 0 (0%) 2 (2.4%) 0 (0%) 2.4%
29 APPLICATION SITE PRURITUS 6 (7.0%) 22 (26%) 22 (26%) 19.2%
30 APPLICATION SITE REACTION 1 (1.2%) 1 (1.2%) 0 (0%) 0.0%
31 APPLICATION SITE SWELLING 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
32 APPLICATION SITE URTICARIA 0 (0%) 1 (1.2%) 2 (2.4%) 1.2%
33 APPLICATION SITE VESICLES 1 (1.2%) 6 (7.1%) 4 (4.8%) 6.0%
34 APPLICATION SITE WARMTH 0 (0%) 0 (0%) 1 (1.2%) 0.0%
35 ASTHENIA 1 (1.2%) 1 (1.2%) 0 (0%) 0.0%
36 CHEST DISCOMFORT 0 (0%) 2 (2.4%) 0 (0%) 2.4%
37 CHEST PAIN 0 (0%) 2 (2.4%) 0 (0%) 2.4%
38 CHILLS 1 (1.2%) 1 (1.2%) 1 (1.2%) 0.0%
39 CYST 0 (0%) 0 (0%) 1 (1.2%) 0.0%
40 FATIGUE 1 (1.2%) 5 (6.0%) 5 (6.0%) 4.8%
41 FEELING ABNORMAL 0 (0%) 1 (1.2%) 0 (0%) 1.2%
42 FEELING COLD 0 (0%) 1 (1.2%) 0 (0%) 1.2%
43 INFLAMMATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
44 MALAISE 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
45 OEDEMA 0 (0%) 0 (0%) 2 (2.4%) 0.0%
46 OEDEMA PERIPHERAL 2 (2.3%) 2 (2.4%) 1 (1.2%) 0.1%
47 PAIN 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
48 PYREXIA 2 (2.3%) 1 (1.2%) 0 (0%) -1.1%
49 SECRETION DISCHARGE 0 (0%) 0 (0%) 1 (1.2%) 0.0%
50 SUDDEN DEATH 0 (0%) 0 (0%) 1 (1.2%) 0.0%
51 SWELLING 0 (0%) 0 (0%) 1 (1.2%) 0.0%
52 ULCER 0 (0%) 0 (0%) 1 (1.2%) 0.0%
53 SKIN AND SUBCUTANEOUS TISSUE DISORDERS 21 (24%) 42 (50%) 42 (50%) 25.6%
54 ACTINIC KERATOSIS 0 (0%) 1 (1.2%) 0 (0%) 1.2%
55 ALOPECIA 1 (1.2%) 0 (0%) 0 (0%) -1.2%
56 BLISTER 0 (0%) 1 (1.2%) 5 (6.0%) 1.2%
57 COLD SWEAT 1 (1.2%) 0 (0%) 0 (0%) -1.2%
58 DERMATITIS ATOPIC 1 (1.2%) 0 (0%) 0 (0%) -1.2%
59 DERMATITIS CONTACT 0 (0%) 0 (0%) 1 (1.2%) 0.0%
60 DRUG ERUPTION 1 (1.2%) 0 (0%) 0 (0%) -1.2%
61 ERYTHEMA 9 (10%) 14 (17%) 15 (18%) 6.2%
62 HYPERHIDROSIS 2 (2.3%) 8 (9.5%) 4 (4.8%) 7.2%
63 PRURITUS 8 (9.3%) 26 (31%) 23 (27%) 21.7%
64 PRURITUS GENERALISED 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
65 RASH 5 (5.8%) 11 (13%) 13 (15%) 7.3%
66 RASH ERYTHEMATOUS 0 (0%) 0 (0%) 2 (2.4%) 0.0%
67 RASH MACULO-PAPULAR 0 (0%) 1 (1.2%) 0 (0%) 1.2%
68 RASH PAPULAR 0 (0%) 1 (1.2%) 0 (0%) 1.2%
69 RASH PRURITIC 0 (0%) 2 (2.4%) 1 (1.2%) 2.4%
70 SKIN EXFOLIATION 0 (0%) 0 (0%) 1 (1.2%) 0.0%
71 SKIN IRRITATION 3 (3.5%) 5 (6.0%) 6 (7.1%) 2.5%
72 SKIN ODOUR ABNORMAL 0 (0%) 1 (1.2%) 0 (0%) 1.2%
73 SKIN ULCER 1 (1.2%) 0 (0%) 0 (0%) -1.2%
74 URTICARIA 0 (0%) 1 (1.2%) 1 (1.2%) 1.2%
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