Man pages for haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
| anova.haplo.glm | Analysis of variance for haplo.glm model fit |
| chisq.power | Power and sample size for the chi-square distribution |
| find.haplo.beta.qt | Find beta coefficients for risk haplotypes, for specified r2 |
| fitted.haplo.glm | Fitted values from haplo.glm fit |
| f.power | Power and sample size for the F distribution |
| geno1to2 | convert genotype matrix from 1-column 2-column |
| geno.count.pairs | Counts of Total Haplotype Pairs Produced by Genotypes |
| get.hapPair | Get a list of objects for haplotype pairs |
| Ginv | Compute Generalized Inverse of Input Matrix |
| haplo.cc | Haplotype Association Analysis in a Case-Control design |
| haplo.design | Build a design matrix for haplotypes |
| haplo.em | EM Computation of Haplotype Probabilities, with Progressive... |
| haplo.em.control | Create the Control Parameters for the EM Computation of... |
| haplo.em.fitter | Compute engine for haplotype EM algorithm |
| haplo.glm | GLM Regression of Trait on Ambiguous Haplotypes |
| haplo.glm.control | Create list of control parameters for haplo.glm |
| haplo.group | Frequencies for Haplotypes by Grouping Variable |
| haplo.hash | Integer Rank Codes for Haplotypes |
| haplo.model.frame | Sets up a model frame for haplo.glm |
| haplo.power.cc | Compute either power or sample size for haplotype... |
| haplo.power.qt | Compute either power or sample size for haplotype... |
| haplo.scan | Search for a trait-locus by sliding a fixed-width window over... |
| haplo.score | Score Statistics for Association of Traits with Haplotypes |
| haplo.score.merge | Merge haplo.score And haplo.group Objects |
| haplo.score.slide | Score Statistics for Association of Traits with Haplotypes |
| hapPower.demo | Set of haplotypes and frequencies for power and sample size... |
| hla.demo | HLA Loci and Serologic Response to Measles Vaccination |
| internalHaploStats | Internal functions for the HaploStats package. See the help... |
| locator.haplo | Find Location from Mouse Clicks and Print Haplotypes on Plot |
| locus | Creates an object of class "locus" |
| louis.info | Louis Information for haplo.glm |
| na.geno.keep | Remove rows with NA in covariates, but keep genotypes with... |
| plot.haplo.score | Plot Haplotype Frequencies versus Haplotype Score Statistics |
| plot.haplo.score.slide | Plot a haplo.score.slide Object |
| plot.seqhap | Plot a seqhap object |
| printBanner | Print a nice banner |
| print.haplo.cc | Print a haplo.cc object |
| print.haplo.em | Print contents of a haplo.em object |
| print.haplo.group | Print a haplo.group object |
| print.haplo.scan | Print a haplo.scan object |
| print.haplo.score | Print a haplo.score object |
| print.haplo.score.merge | Print a haplo.score.merge object |
| print.haplo.score.slide | Print the contents of a haplo.score.slide object |
| residuals.haplo.glm | Accessing residuals for haplo.glm fit |
| score.sim.control | Create the list of control parameters for simulations in... |
| seqhap | Sequential Haplotype Scan Association Analysis for... |
| seqhap.dat | Simulated data for seqhap examples |
| setupGeno | Create a group of locus objects from a genotype matrix,... |
| summaryGeno | Summarize Full Haplotype Enumeration on Genotype Matrix |
| summary.haplo.em | Summarize contents of a haplo.em object |
| summary.haplo.glm | Print and summary of a haplo.glm object |
| vcov.haplo.glm | variance-covariance matrix of a fitted haplo.glm object |
| x.sexcheck | consistency checks for x.linked locus |
