allelic.richness: Estimates allelic richness

In hierfstat: Estimation and Tests of Hierarchical F-Statistics

Estimates allelic richness

Description

Estimates allelic richness, the rarefied allelic counts, per locus and population

Usage

allelic.richness(data,min.n=NULL,diploid=TRUE)

Arguments

data	A data frame, with as many rows as individuals. The first column contains the population to which the individual belongs, the following to the different loci
min.n	The number of alleles down to which the number of alleles should be rarefied. The default is the minimum number of individuals genotyped (times 2 for diploids)
diploid	a boolean specifying wether individuals are diploid (default) or haploid

Value

min.all	The number of alleles used for rarefaction
Ar	A table with as many rows as loci and columns as populations containing the rarefied allele counts

Author(s)

Jerome Goudet [e-mail]

References

El Mousadik A. and Petit R.J. (1996) High level of genetic differentiation for allelic richness among populations of the argan tree argania spinosa skeels endemic to Morocco. Theoretical and Applied Genetics, 92:832-839

Hurlbert S.H. (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology, 52:577-586

Petit R.J., El Mousadik A. and Pons O. (1998) Identifying populations for conservation on the basis of genetic markers. Conservation Biology, 12:844-855

Examples

data(gtrunchier)
allelic.richness(gtrunchier[,-1])

hierfstat documentation built on May 6, 2022, 1:05 a.m.