boot.ppfst: Performs bootstrapping over loci of pairwise Fst

Description Usage Arguments Value Author(s) Examples

View source: R/ppboot.R

Description

Performs bootstrapping over loci of pairwise Fst

Usage

1
boot.ppfst(dat=dat,nboot=100,quant=c(0.025,0.975),diploid=TRUE,...)

Arguments

dat

a genetic data frame

nboot

number of bootstraps

quant

the quantiles for bootstrapped ci

diploid

whether data are from diploid organisms

...

further arguments to pass to the function

Value

call

call to the function

ll

lower limit ci

ul

upper limit ci

vc.per.loc

for each pair of population, the variance components per locus

Author(s)

Jerome Goudet jerome.goudet@unil.ch

Examples

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4

Example output

   1         2         3         4         5         6
1 NA 0.3152711 0.2505510 0.3972498 0.2876537 0.3133230
2 NA        NA 0.6412353 0.6219694 0.3730964 0.5753082
3 NA        NA        NA 0.3808348 0.4138178 0.3671645
4 NA        NA        NA        NA 0.3471643 0.2734293
5 NA        NA        NA        NA        NA 0.3591503
6 NA        NA        NA        NA        NA        NA
   1         2         3         4         5         6
1 NA 0.5885679 0.5591005 0.5165285 0.3661754 0.4625125
2 NA        NA 0.8930282 0.8459820 0.7080870 0.8373774
3 NA        NA        NA 0.8052926 0.7190597 0.7020666
4 NA        NA        NA        NA 0.6670908 0.5591231
5 NA        NA        NA        NA        NA 0.6298410
6 NA        NA        NA        NA        NA        NA

hierfstat documentation built on Nov. 17, 2021, 5:08 p.m.